RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1248471" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1248471 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8704817 8704817 PRJNA1248471_S_NODE_7547_length_220_cov_2.783626_g7447_i0 PRJNA1248471 7547 220 2.783626 6.1239772 Bodo 5712 Euglenozoa other_Eukaryota 407 3.61e-109   NTclustered gi|77994636|gb|DQ207574.1| 75058 g7447 i0 100 100.445454545455 220 0 100 0 1 220 892 1111 Bodo saltans strain HFCC311 18S ribosomal RNA gene, partial sequence blastn 22098 407 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
14382852 14382852 PRJNA1248471_S_NODE_7852_length_217_cov_1.880952_g7752_i0 PRJNA1248471 7852 217 1.880952 4.08166584 Bodo saltans 75058 Euglenozoa other_Eukaryota 243 1.06e-59   NTclustered gi|197723519|gb|EF681898.2| 75058 g7752 i0 93.827 109.387096774194 162 9 74 1 51 211 311 150 Bodo saltans strain HFCC13 28S ribosomal RNA gene, partial sequence blastn 23737 243 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
16354433 16354433 PRJNA1248471_S_NODE_21553_length_162_cov_2.230088_g21453_i0 PRJNA1248471 21553 162 2.230088 3.61274256 Bodo 5712 Euglenozoa other_Eukaryota 300 4.36e-77   NTclustered gi|77994636|gb|DQ207574.1| 75058 g21453 i0 100 89.4135802469136 162 0 100 0 1 162 1279 1118 Bodo saltans strain HFCC311 18S ribosomal RNA gene, partial sequence blastn 14485 300 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;