RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1248424" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1248424 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9280221 9280221 PRJNA1248424_P_NODE_16828_length_1076_cov_2.638086_g11917_i0 PRJNA1248424 16828 1076 2.638086 28.38580536 Candidatus Borreliella tachyglossi 1964448 Bacteria Bacteria 54.7 0.03   NTclustered gi|1384975918|gb|CP025788.1| 1964448 g11917 i0 96.875 0.0297397769516729 32 1 3 0 50 81 15236 15205 Candidatus Borreliella tachyglossi strain Bc-F10-1268 plasmid pl25 blastn 32 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Candidatus Borreliella tachyglossi
22728756 22728756 PRJNA1248424_P_NODE_54638_length_289_cov_1.296296_g48570_i0 PRJNA1248424 54638 289 1.296296 3.74629544 Treponema 157 Bacteria Bacteria 492 1.33e-134   NTclustered gi|2034589463|gb|CP050497.1| 69710 g48570 i0 97.251 196.055363321799 291 6 100 1 1 289 215730 216020 Treponema vincentii strain OMZ 806 chromosome, complete genome blastn 56660 492 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;