RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1248424" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1248424 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2903745 2903745 PRJNA1248424_P_NODE_56663_length_284_cov_1.417062_g50595_i0 PRJNA1248424 56663 284 1.417062 4.02445608 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 54.7 0.007   NTclustered gi|687175187|emb|LN100089.1| 99802 g50595 i0 100 0.200704225352113 29 0 10 0 131 159 578 550 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0094803 blastn 57 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
2904024 2904024 PRJNA1248424_P_NODE_70363_length_250_cov_0.870056_g64294_i0 PRJNA1248424 70363 250 0.870056 2.17514 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 52.8 0.023   NTclustered gi|60701501|gb|AY915894.1| 6182 g64294 i0 100 0.112 28 0 11 0 12 39 337 364 Schistosoma japonicum SJCHGC09830 protein mRNA, complete cds blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
6730500 6730500 PRJNA1248424_P_NODE_46066_length_330_cov_1.945525_g40002_i0 PRJNA1248424 46066 330 1.945525 6.4202325 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.031   NTclustered gi|690670154|emb|LN220880.1| 99802 g40002 i0 88.372 0.3 43 5 13 0 83 125 156 114 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0182358 blastn 99 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
22029679 22029679 PRJNA1248424_P_NODE_56298_length_285_cov_1.325472_g50230_i0 PRJNA1248424 56298 285 1.325472 3.7775952 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 52.8 0.026   NTclustered gi|687549386|emb|LK635088.1| 57078 g50230 i0 100 0.0982456140350877 28 0 10 0 27 54 612 639 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0022428 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;