RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1248424" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1248424 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2903403 2903403 PRJNA1248424_P_NODE_38523_length_387_cov_2.000000_g32464_i0 PRJNA1248424 38523 387 2 7.74 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.01   NTclustered gi|690018486|emb|LM525724.1| 174720 g32464 i0 100 0.0749354005167959 29 0 7 0 356 384 60753 60725 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000051 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
8005905 8005905 PRJNA1248424_P_NODE_37447_length_398_cov_2.196923_g31390_i0 PRJNA1248424 37447 398 2.196923 8.74375354 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.038   NTclustered gi|687022649|emb|LM525563.1| 174720 g31390 i0 100 0.070351758793969807 28 0 7 0 21 48 559034 559007 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000008 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
11831731 11831731 PRJNA1248424_P_NODE_67990_length_253_cov_2.366667_g61921_i0 PRJNA1248424 67990 253 2.366667 5.98766751 Loa loa 7209 Nematoda Nematoda 71.3 6.34e-8   NTclustered gi|1158596406|ref|XM_020450169.1| 7209 g61921 i0 92 0.197628458498024 50 4 20 0 157 206 1875 1826 Loa loa ZAG-1 protein mRNA blastn 50 71.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
20754654 20754654 PRJNA1248424_P_NODE_66937_length_256_cov_2.863388_g60868_i0 PRJNA1248424 66937 256 2.863388 7.33027328 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.023   NTclustered gi|687865860|emb|LK928191.1| 6239 g60868 i0 100 0.21875 28 0 11 0 13 40 30014 30041 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000132 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22029828 22029828 PRJNA1248424_P_NODE_63898_length_265_cov_1.203125_g57829_i0 PRJNA1248424 63898 265 1.203125 3.18828125 Strongyloides papillosus 174720 Nematoda Nematoda 58.4 5.21e-4   NTclustered gi|687022719|emb|LM525633.1| 174720 g57829 i0 100 0.116981132075472 31 0 12 0 43 73 74082 74112 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000041 blastn 31 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
24578989 24578989 PRJNA1248424_P_NODE_41700_length_359_cov_2.377622_g35638_i0 PRJNA1248424 41700 359 2.377622 8.53566298 Loa loa 7209 Nematoda Nematoda 63.9 1.57e-5   NTclustered gi|1158596406|ref|XM_020450169.1| 7209 g35638 i0 93.182 0.434540389972145 44 1 12 2 145 188 1868 1827 Loa loa ZAG-1 protein mRNA blastn 156 63.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;