RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1248424" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1248424 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
353149 353149 PRJNA1248424_P_NODE_75621_length_245_cov_0.895349_g69552_i0 PRJNA1248424 75621 245 0.895349 2.19360505 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 217 7.41e-52   NTclustered gi|2386235661|ref|XM_001440072.2| 5888 g69552 i0 83.913 3.09387755102041 230 34 94 3 13 242 1015 1241 Paramecium tetraurelia uncharacterized protein (GSPATT00009104001), mRNA blastn 758 217 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
10556880 10556880 PRJNA1248424_P_NODE_47469_length_322_cov_3.449799_g41402_i0 PRJNA1248424 47469 322 3.449799 11.10835278 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 527 4.119999999999998e-145   NTclustered gi|194245783|gb|EU828456.1| 5888 g41402 i0 96.273 99.9192546583851 322 10 100 1 1 322 1805 1486 Paramecium tetraurelia large subunit ribosomal RNA gene, complete sequence blastn 32174 527 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
14382159 14382159 PRJNA1248424_P_NODE_60432_length_274_cov_2.099502_g54364_i0 PRJNA1248424 60432 274 2.099502 5.75263548 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 374 4.7299999999999984e-99   NTclustered gi|2386227721|ref|XM_001430998.2| 5888 g54364 i0 91.513 3.94160583941606 271 23 99 0 4 274 272 2 Paramecium tetraurelia uncharacterized protein (GSPATT00033490001), partial mRNA blastn 1080 374 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
16354318 16354318 PRJNA1248424_P_NODE_51273_length_302_cov_2.397380_g45205_i0 PRJNA1248424 51273 302 2.39738 7.2400876 Paramecium 5884 SAR_Eukaryotes SAR_Eukaryotes 553 6.32e-153   NTclustered gi|1899794309|gb|MT975644.1| 5887 g45205 i0 99.669 99.9867549668874 302 1 100 0 1 302 1236 1537 Paramecium sp. strain RB1 small subunit ribosomal RNA gene, partial sequence blastn 30196 553 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium sp.
18204734 18204734 PRJNA1248424_P_NODE_61295_length_272_cov_1.447236_g55227_i0 PRJNA1248424 61295 272 1.447236 3.93648192 Paramecium multimicronucleatum 44030 SAR_Eukaryotes SAR_Eukaryotes 497 2.67e-136   NTclustered gi|519419878|gb|KF287718.1| 44030 g55227 i0 99.632 96.8125 272 1 100 0 1 272 557 286 Paramecium multimicronucleatum isolate 2_m large subunit ribosomal RNA gene, partial sequence blastn 26333 497 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium multimicronucleatum
20178059 20178059 PRJNA1248424_P_NODE_67016_length_256_cov_1.737705_g60947_i0 PRJNA1248424 67016 256 1.737705 4.4485248 Paramecium 5884 SAR_Eukaryotes SAR_Eukaryotes 470 5.42e-128   NTclustered gi|1899794309|gb|MT975644.1| 5887 g60947 i0 100 98.51171875 254 0 99 0 1 254 520 773 Paramecium sp. strain RB1 small subunit ribosomal RNA gene, partial sequence blastn 25219 470 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium sp.
20754148 20754148 PRJNA1248424_P_NODE_41777_length_359_cov_1.115385_g35715_i0 PRJNA1248424 41777 359 1.115385 4.00423215 Oxytricha trifallax 1172189 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.034   NTclustered gi|359817572|gb|JN383843.1| 1172189 g35715 i0 100 0.0779944289693593 28 0 8 0 137 164 52030 52057 Oxytricha trifallax mitochondrion blastn 28 52.8 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Oxytricha Oxytricha trifallax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;