RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1248424" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1248424 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1627793 1627793 PRJNA1248424_P_NODE_63362_length_266_cov_1.870466_g57293_i0 PRJNA1248424 63362 266 1.870466 4.97543956 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 97.1 1.11e-15   NTclustered gi|2874253959|emb|OY970284.1| 2651171 g57293 i0 84.694 17.0864661654135 98 14 36 1 170 266 1388647 1388744 MAG: Thermoanaerobaculia bacterium isolate MFD05513.bin.1.42 genome assembly, chromosome: 1 blastn 4545 97.1 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
14382507 14382507 PRJNA1248424_P_NODE_77792_length_243_cov_0.905882_g71723_i0 PRJNA1248424 77792 243 0.905882 2.20129326 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 165 2.6999999999999997e-36   NTclustered gi|2874253744|emb|OY969603.1| 171953 g71723 i0 85.443 5.24279835390946 158 23 65 0 1 158 1687176 1687019 MAG: uncultured Acidobacteriota bacterium isolate MFD01476.bin.c.1 genome assembly, chromosome: 1 blastn 1274 165 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
20754624 20754624 PRJNA1248424_P_NODE_65197_length_261_cov_1.654255_g59128_i0 PRJNA1248424 65197 261 1.654255 4.31760555 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 117 8.32e-22   NTclustered gi|2874253940|emb|OY970265.1| 171953 g59128 i0 98.485 12.4750957854406 66 1 25 0 196 261 4850260 4850325 MAG: uncultured Acidobacteriota bacterium isolate MFD01476.bin.1.56 genome assembly, chromosome: 1 blastn 3256 117 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;