RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1248424" and tax_clade = "PVC group"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1248424 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
352890 352890 PRJNA1248424_P_NODE_62841_length_268_cov_1.184615_g56772_i0 PRJNA1248424 62841 268 1.184615 3.1747682 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 52.8 0.025   NTclustered gi|2874254106|emb|OY970189.1| 100233 g56772 i0 100 0.104477611940299 28 0 10 0 189 216 1418115 1418088 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
353310 353310 PRJNA1248424_P_NODE_8881_length_1914_cov_16.393808_g5726_i1 PRJNA1248424 8881 1914 16.393808 313.77748512 uncultured Chlamydiae bacterium 305355 Bacteria Bacteria 56.5 0.015   NTclustered gi|2874254045|emb|OY970369.1| 305355 g5726 i1 100 0.0156739811912226 30 0 2 0 675 704 1852363 1852334 MAG: uncultured Chlamydiae bacterium isolate MFD06092.bin.1.176 genome assembly, chromosome: 1 blastn 30 56.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
16354323 16354323 PRJNA1248424_P_NODE_51933_length_299_cov_2.530973_g45865_i0 PRJNA1248424 51933 299 2.530973 7.56760927 Gemmataceae 1914233 Bacteria Bacteria 206 2.02e-48   NTclustered gi|1712585314|gb|CP036273.1| 2528023 g45865 i0 91.391 49.2608695652174 151 11 50 2 150 299 2755806 2755657 Urbifossiella limnaea strain ETA_A1 chromosome, complete genome blastn 14729 206 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Urbifossiella Urbifossiella limnaea
18205123 18205123 PRJNA1248424_P_NODE_8055_length_2046_cov_15.530157_g5726_i0 PRJNA1248424 8055 2046 15.530157 317.74701222 uncultured Chlamydiae bacterium 305355 Bacteria Bacteria 56.5 0.016   NTclustered gi|2874254045|emb|OY970369.1| 305355 g5726 i0 100 0.0146627565982405 30 0 1 0 807 836 1852363 1852334 MAG: uncultured Chlamydiae bacterium isolate MFD06092.bin.1.176 genome assembly, chromosome: 1 blastn 30 56.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;