RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1248424" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA1248424 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16929979 16929979 PRJNA1248424_P_NODE_47574_length_322_cov_2.710843_g41507_i0 PRJNA1248424 47574 322 2.710843 8.72891446 Methanocaldococcus indicus 213231 Archaea Archaea 54.7 0.008   NTclustered gi|2891700162|gb|CP178165.1| 213231 g41507 i0 100 0.0900621118012422 29 0 9 0 11 39 789264 789236 Methanocaldococcus indicus strain SL43 chromosome, complete genome blastn 29 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus indicus
18204129 18204129 PRJNA1248424_P_NODE_31315_length_486_cov_1.496368_g25272_i0 PRJNA1248424 31315 486 1.496368 7.27234848 Methanobrevibacter sp. DSM 116169 3242727 Archaea Archaea 52.8 0.047   NTclustered gi|2871252316|gb|CP166990.1| 3242727 g25272 i0 100 0.0576131687242798 28 0 6 0 294 321 301429 301456 Methanobrevibacter sp. DSM 116169 chromosome, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. DSM 116169

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;