RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1248424" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1248424 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2327223 2327223 PRJNA1248424_P_NODE_40162_length_372_cov_1.334448_g34102_i0 PRJNA1248424 40162 372 1.334448 4.96414656 Dictyostelium 5782 Evosea other_Eukaryota 326 1.89e-84   NTclustered gi|7274|emb|X55973.1| 44689 g34102 i0 84.226 87.3118279569892 336 51 90 2 5 339 478 812 D. discoideum EF1-I gene for elongation factor 1 alpha blastn 32480 326 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
6730390 6730390 PRJNA1248424_P_NODE_40506_length_369_cov_1.560811_g34445_i0 PRJNA1248424 40506 369 1.560811 5.75939259 Dictyostelium purpureum 5786 Evosea other_Eukaryota 285 3.18e-72   NTclustered gi|330818907|ref|XM_003291484.1| 5786 g34445 i0 80.811 10.3739837398374 370 65 99 5 2 368 10 376 Dictyostelium purpureum ribosomal protein L10E (DICPUDRAFT_92700), mRNA blastn 3828 285 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
10557564 10557564 PRJNA1248424_P_NODE_81949_length_211_cov_4.391304_g75879_i0 PRJNA1248424 81949 211 4.391304 9.26565144 Dictyostelium discoideum 44689 Evosea other_Eukaryota 154 4.94e-33   NTclustered gi|66826022|ref|XM_641274.1| 352472 g75879 i0 80.788 31.085308056872 203 33 95 5 6 205 200 1 Dictyostelium discoideum AX4 S60 ribosomal protein L36a (rpl36a) mRNA, complete cds blastn 6559 154 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
20754424 20754424 PRJNA1248424_P_NODE_56397_length_285_cov_1.089623_g50329_i0 PRJNA1248424 56397 285 1.089623 3.10542555 Vannella sp. strain CAZ6/I 325077 Discosea other_Eukaryota 442 1.3399999999999994e-119   NTclustered gi|62865939|gb|AY929914.1| 325077 g50329 i0 95.971 95.0140350877193 273 9 95 2 15 285 1369 1641 Vannella sp. strain CAZ6/I 18S small subunit ribosomal RNA gene, partial sequence blastn 27079 442 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain CAZ6/I

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;