RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1247234" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1247234 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6729286 6729286 PRJNA1247234_P_NODE_25006_length_246_cov_0.901734_g24850_i0 PRJNA1247234 25006 246 0.901734 2.21826564 Geotalea uraniireducens 351604 Bacteria Bacteria 394 3.2e-105   NTclustered gi|2425841343|dbj|AP027151.1| 351604 g24850 i0 95.528 13 246 11 100 0 1 246 514432 514677 Geotalea uraniireducens NIT-SL11 DNA, complete genome blastn 3198 394 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea uraniireducens
10555732 10555732 PRJNA1247234_P_NODE_6989_length_395_cov_0.950311_g6833_i0 PRJNA1247234 6989 395 0.950311 3.75372845 Desulfobulbus oligotrophicus 1909699 Bacteria Bacteria 558 1.83e-154   NTclustered gi|1951276582|gb|CP054140.1| 1909699 g6833 i0 92.152 9.93924050632911 395 31 100 0 1 395 699711 699317 Desulfobulbus oligotrophicus strain Prop6 chromosome, complete genome blastn 3926 558 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus oligotrophicus
11829962 11829962 PRJNA1247234_P_NODE_1570_length_743_cov_3.040299_g1443_i0 PRJNA1247234 1570 743 3.040299 22.58942157 Desulfovibrio desulfuricans 876 Bacteria Bacteria 1373 0   NTclustered gi|2172810686|gb|CP077745.1| 876 g1443 i0 100 508.394347240915 743 0 100 0 1 743 217142 217884 Desulfovibrio desulfuricans strain Edelweiss chromosome, complete genome blastn 377737 1373 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans
18203225 18203225 PRJNA1247234_P_NODE_25535_length_245_cov_0.906977_g25379_i0 PRJNA1247234 25535 245 0.906977 2.22209365 Desulfovibrio desulfuricans 876 Bacteria Bacteria 440 4.0399999999999986e-119   NTclustered gi|2172810686|gb|CP077745.1| 876 g25379 i0 99.18 3.97551020408163 244 2 99 0 1 244 2791403 2791646 Desulfovibrio desulfuricans strain Edelweiss chromosome, complete genome blastn 974 440 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans
18903162 18903162 PRJNA1247234_P_NODE_13735_length_301_cov_1.359649_g13579_i0 PRJNA1247234 13735 301 1.359649 4.09254349 Solidesulfovibrio 2910984 Bacteria Bacteria 475 1.4e-129   NTclustered gi|470475467|ref|NR_076282.1| 184917 g13579 i0 95.333 321.774086378738 300 13 99 1 1 299 1166 1465 Desulfovibrio magneticus strain RS-1 23S ribosomal RNA gene, complete sequence blastn 96854 475 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Solidesulfovibrio Solidesulfovibrio magneticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;