RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA1247234" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1247234 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1051790 1051790 PRJNA1247234_P_NODE_8661_length_362_cov_1.629758_g8505_i0 PRJNA1247234 8661 362 1.629758 5.89972396 Mytilus 6548 Mollusca Mollusca 669 0   NTclustered gi|363710224|gb|HM180711.1| 29158 g8505 i0 100 100 362 0 100 0 1 362 509 148 Mytilus galloprovincialis voucher NSMK:MS-000656 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 36200 669 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus galloprovincialis
2902482 2902482 PRJNA1247234_P_NODE_643_length_1075_cov_4.208583_g564_i0 PRJNA1247234 643 1075 4.208583 45.24226725 Mytilus coruscus 42192 Mollusca Mollusca 1975 0   NTclustered gi|2633555496|gb|OR453540.1| 42192 g564 i0 99.814 79.446511627907 1075 2 100 0 1 1075 16484 15410 Mytilus coruscus isolate Kart1 mitochondrion, complete genome blastn 85405 1975 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus coruscus
5454912 5454912 PRJNA1247234_P_NODE_23625_length_248_cov_0.891429_g23469_i0 PRJNA1247234 23625 248 0.891429 2.21074392 Mytilus californianus 6549 Mollusca Mollusca 436 5.3e-118   NTclustered gi|2334653642|ref|XM_052230953.1| 6549 g23469 i0 98.387 4.85483870967742 248 4 100 0 1 248 454 207 PREDICTED: Mytilus californianus 60S ribosomal protein L24-like (LOC127724092), mRNA blastn 1204 436 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
5454991 5454991 PRJNA1247234_P_NODE_27465_length_242_cov_1.349112_g27309_i0 PRJNA1247234 27465 242 1.349112 3.26485104 Mytilus californianus 6549 Mollusca Mollusca 422 1.44e-113   NTclustered gi|2334647355|ref|XM_052229385.1| 6549 g27309 i0 98.333 11.0413223140496 240 4 99 0 3 242 57 296 PREDICTED: Mytilus californianus 60S ribosomal protein L30-like (LOC127722983), mRNA blastn 2672 422 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
10555548 10555548 PRJNA1247234_P_NODE_22629_length_249_cov_2.659091_g22473_i0 PRJNA1247234 22629 249 2.659091 6.62113659 Mytilus californianus 6549 Mollusca Mollusca 381 2.5299999999999995e-101   NTclustered gi|2334660749|ref|XM_052232704.1| 6549 g22473 i0 96.137 7.55823293172691 233 9 94 0 1 233 377 145 PREDICTED: Mytilus californianus soma ferritin-like (LOC127725615), mRNA blastn 1882 381 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
10555621 10555621 PRJNA1247234_P_NODE_26449_length_244_cov_0.912281_g26293_i0 PRJNA1247234 26449 244 0.912281 2.22596564 Argopecten irradians 31199 Mollusca Mollusca 446 8.639999999999999e-121   NTclustered gi|2835337178|ref|XM_069282367.1| 31199 g26293 i0 99.59 7.04508196721311 244 1 100 0 1 244 350 107 PREDICTED: Argopecten irradians small ribosomal subunit protein eS6-like (LOC138333785), mRNA blastn 1719 446 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
14380610 14380610 PRJNA1247234_P_NODE_22992_length_249_cov_0.886364_g22836_i0 PRJNA1247234 22992 249 0.886364 2.20704636 Mytilus californianus 6549 Mollusca Mollusca 385 1.96e-102   NTclustered gi|2334778183|ref|XM_052213183.1| 6549 g22836 i0 97.345 0.907630522088353 226 6 91 0 24 249 565 340 PREDICTED: Mytilus californianus zinc finger protein 235-like (LOC127708330), mRNA blastn 226 385 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
15654545 15654545 PRJNA1247234_P_NODE_26513_length_244_cov_0.912281_g26357_i0 PRJNA1247234 26513 244 0.912281 2.22596564 Mytilus coruscus 42192 Mollusca Mollusca 440 4.019999999999999e-119   NTclustered gi|2633555496|gb|OR453540.1| 42192 g26357 i0 99.18 64.4344262295082 244 2 100 0 1 244 13960 14203 Mytilus coruscus isolate Kart1 mitochondrion, complete genome blastn 15722 440 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus coruscus
23303782 23303782 PRJNA1247234_P_NODE_20499_length_253_cov_0.866667_g20343_i0 PRJNA1247234 20499 253 0.866667 2.19266751 Mytilus californianus 6549 Mollusca Mollusca 446 9.01e-121   NTclustered gi|2334664699|ref|XM_052233622.1| 6549 g20343 i0 98.419 4.11857707509881 253 4 100 0 1 253 1223 971 PREDICTED: Mytilus californianus sequestosome-1-like (LOC127726304), mRNA blastn 1042 446 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;