RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1247234" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1247234 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10555657 10555657 PRJNA1247234_P_NODE_28009_length_242_cov_0.923077_g27853_i0 PRJNA1247234 28009 242 0.923077 2.23384634 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 169 2.07e-37   NTclustered gi|2874254163|emb|OY970395.1| 412054 g27853 i0 83.708 0.735537190082645 178 29 74 0 47 224 1435559 1435382 MAG: uncultured Gemmatimonadales bacterium isolate MFD05684.bin.c.1 genome assembly, chromosome: 1 blastn 178 169 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
11830110 11830110 PRJNA1247234_P_NODE_24370_length_247_cov_0.896552_g24214_i0 PRJNA1247234 24370 247 0.896552 2.21448344 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 255 1.59e-63   NTclustered gi|2874253728|emb|OY969570.1| 412054 g24214 i0 85.597 5.54655870445344 243 35 98 0 5 247 1742188 1742430 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 1370 255 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
14380472 14380472 PRJNA1247234_P_NODE_15932_length_283_cov_1.114286_g15776_i0 PRJNA1247234 15932 283 1.114286 3.15342938 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 368 2.28e-97   NTclustered gi|2874254107|emb|OY970192.1| 412054 g15776 i0 90.141 99.0388692579505 284 26 100 2 1 283 4301894 4302176 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 28028 368 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
15654401 15654401 PRJNA1247234_P_NODE_19353_length_258_cov_0.875676_g19197_i0 PRJNA1247234 19353 258 0.875676 2.25924408 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 366 7.38e-97   NTclustered gi|2874253978|emb|OY970303.1| 412054 g19197 i0 93.173 32.7209302325581 249 17 100 0 1 249 1903236 1903484 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 8442 366 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
19477516 19477516 PRJNA1247234_P_NODE_21076_length_252_cov_0.871508_g20920_i0 PRJNA1247234 21076 252 0.871508 2.19620016 Gaopeijia maritima 3119007 Bacteria Bacteria 180 1e-40   NTclustered gi|2716997671|gb|CP144380.1| 3119007 g20920 i0 84.239 0.73015873015873 184 29 73 0 69 252 4067285 4067102 Gaopeijia maritima strain DH-78 chromosome, complete genome blastn 184 180 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Gaopeijiales Gaopeijiaceae Gaopeijia Gaopeijia maritima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;