RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1245487" and tax_phylum = "Thermoproteota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1245487 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10555203 10555203 PRJNA1245487_P_NODE_19369_length_252_cov_0.871508_g19031_i0 PRJNA1245487 19369 252 0.871508 2.19620016 uncultured crenarchaeote 29281 Archaea Archaea 226 1.2699999999999999e-54   NTclustered gi|42557759|emb|AJ627422.1| 29281 g19031 i0 82.937 46.468253968254 252 41 100 2 1 252 40513 40762 Uncultured crenarchaeote genomic fragment 54d9 blastn 11710 226 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
23303524 23303524 PRJNA1245487_P_NODE_22179_length_241_cov_2.166667_g21841_i0 PRJNA1245487 22179 241 2.166667 5.22166747 uncultured crenarchaeote 29281 Archaea Archaea 220 5.62e-53   NTclustered gi|42557759|emb|AJ627422.1| 29281 g21841 i0 83.544 94.5684647302905 237 37 98 2 1 237 40546 40780 Uncultured crenarchaeote genomic fragment 54d9 blastn 22791 220 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;