RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1245487" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1245487 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
351069 351069 PRJNA1245487_P_NODE_8341_length_423_cov_1.262857_g8003_i0 PRJNA1245487 8341 423 1.262857 5.34188511 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 435 3.46e-117   NTclustered gi|2575803239|emb|OY729416.1| 2202153 g8003 i0 86.139 123.307328605201 404 54 96 2 1 404 77048 76647 MAG: Thermodesulfobacteriota bacterium isolate ba02c5ff-97d3-4768-ae28-618c4039653d genome assembly, chromosome: 1 blastn 52159 435 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
9279266 9279266 PRJNA1245487_P_NODE_14008_length_305_cov_1.715517_g13670_i0 PRJNA1245487 14008 305 1.715517 5.23232685 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 292 1.54e-74   NTclustered gi|2891482145|emb|OZ219878.1| 2202153 g13670 i0 86.029 210.4 272 38 89 0 34 305 213853 213582 MAG: Thermodesulfobacteriota bacterium isolate 5b8d878f-b741-4c1d-a9b4-bc29eff46044 genome assembly, chromosome: 1 blastn 64172 292 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
16928424 16928424 PRJNA1245487_P_NODE_7034_length_466_cov_2.071247_g6698_i0 PRJNA1245487 7034 466 2.071247 9.65201102 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 575 2.1699999999999994e-159   NTclustered gi|2575803239|emb|OY729416.1| 2202153 g6698 i0 89.079 154.534334763948 467 46 100 4 1 466 76380 75918 MAG: Thermodesulfobacteriota bacterium isolate ba02c5ff-97d3-4768-ae28-618c4039653d genome assembly, chromosome: 1 blastn 72013 575 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;