RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1245487" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1245487 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10555156 10555156 PRJNA1245487_P_NODE_15289_length_289_cov_1.402778_g14951_i0 PRJNA1245487 15289 289 1.402778 4.05402842 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 505 1.71e-138   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g14951 i0 98.264 41.9757785467128 288 5 99 0 2 289 4270 3983 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12131 505 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
15078843 15078843 PRJNA1245487_P_NODE_14912_length_293_cov_1.840909_g14574_i0 PRJNA1245487 14912 293 1.840909 5.39386337 Naegleria 5761 Heterolobosea other_Eukaryota 542 1.32e-149   NTclustered gi|1434892785|gb|MH678811.1| 37103 g14574 i0 100 98.8907849829352 293 0 100 0 1 293 208 500 Naegleria sp. strain 1004 small subunit ribosomal RNA gene, partial sequence blastn 28975 542 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
18902753 18902753 PRJNA1245487_P_NODE_12735_length_325_cov_1.182540_g12397_i0 PRJNA1245487 12735 325 1.18254 3.843255 Naegleria 5761 Heterolobosea other_Eukaryota 595 1.1299999999999995e-165   NTclustered gi|2618963742|gb|OR769034.1| 5762 g12397 i0 99.692 66.6215384615385 325 1 100 0 1 325 3368 3044 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 21652 601 0.990016638935108 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
22728202 22728202 PRJNA1245487_P_NODE_18078_length_261_cov_2.585106_g17740_i0 PRJNA1245487 18078 261 2.585106 6.74712666 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 475 1.1899999999999999e-129   NTclustered gi|198250379|gb|EU696948.1| 556273 g17740 i0 99.615 98.1992337164751 260 1 99 0 1 260 1122 1381 Allovahlkampfia spelaea strain SK1 18S ribosomal RNA gene, complete sequence blastn 25630 475 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia spelaea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;