RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1245487" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1245487 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1625759 1625759 PRJNA1245487_P_NODE_15142_length_290_cov_3.161290_g14804_i0 PRJNA1245487 15142 290 3.16129 9.167741 Psammophaga sp. 12208 1238463 SAR_Eukaryotes SAR_Eukaryotes 377 3.8999999999999993e-100   NTclustered gi|559105584|emb|HE998683.1| 1238463 g14804 i0 92.481 73.951724137931 266 16 90 4 27 288 578 843 Psammophaga sp. 12208 partial 18s rRNA gene, isolate 12208 blastn 21446 377 1 Eukaryota Sar   Foraminifera       Psammophaga Psammophaga sp. 12208
12530038 12530038 PRJNA1245487_P_NODE_22630_length_233_cov_2.756250_g22292_i0 PRJNA1245487 22630 233 2.75625 6.4220625 Rotaliida 29185 SAR_Eukaryotes SAR_Eukaryotes 267 6.839999999999999e-67   NTclustered gi|998623043|dbj|LC049322.1| 51039 g22292 i0 92.935 64.8369098712446 184 11 78 2 10 191 4032 4215 Neogloboquadrina dutertrei gene for 28S rRNA, partial sequence, isolate: 11-9-T89 blastn 15107 268 0.996268656716418 Eukaryota Sar   Foraminifera   Rotaliida Globorotaliidae Neogloboquadrina Neogloboquadrina dutertrei
15654034 15654034 PRJNA1245487_P_NODE_12333_length_331_cov_2.430233_g11995_i0 PRJNA1245487 12333 331 2.430233 8.04407123 Pulleniatina obliquiloculata 225066 SAR_Eukaryotes SAR_Eukaryotes 154 8.31e-33   NTclustered gi|998623046|dbj|LC049325.1| 225066 g11995 i0 78.868 24.9244712990937 265 28 95 21 93 331 3082 2820 Pulleniatina obliquiloculata gene for 28S rRNA, partial sequence, isolate: KH284 blastn 8250 154 1 Eukaryota Sar   Foraminifera   Rotaliida Pulleniatinidae Pulleniatina Pulleniatina obliquiloculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;