RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1245487" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1245487 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
350977 350977 PRJNA1245487_P_NODE_20201_length_249_cov_0.886364_g19863_i0 PRJNA1245487 20201 249 0.886364 2.20704636 Meleagris gallopavo 9103 Chordata Chordata 287 5.670000000000001e-73   NTclustered gi|2721460880|emb|HG999685.4| 9103 g19863 i0 87.55 1.91967871485944 249 29 100 1 1 249 5142119 5142365 Meleagris gallopavo genome assembly, chromosome: 5 blastn 478 287 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
10555181 10555181 PRJNA1245487_P_NODE_17069_length_270_cov_1.720812_g16731_i0 PRJNA1245487 17069 270 1.720812 4.6461924 Fringilla coelebs 37598 Chordata Chordata 52.8 0.025   NTclustered gi|2917616466|emb|OZ228696.1| 37598 g16731 i0 100 0.207407407407407 28 0 10 0 239 266 24640983 24640956 Fringilla coelebs genome assembly, chromosome: 9 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Fringilla Fringilla coelebs
15654144 15654144 PRJNA1245487_P_NODE_21733_length_243_cov_0.917647_g21395_i0 PRJNA1245487 21733 243 0.917647 2.22988221 Gallus gallus 9031 Chordata Chordata 449 6.65e-122   NTclustered gi|113462201|gb|AC190398.1| 9031 g21395 i0 100 3.96707818930041 243 0 100 0 1 243 16300 16542 Gallus gallus BAC clone CH261-55O13 from chromosome z, complete sequence blastn 964 449 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
15654146 15654146 PRJNA1245487_P_NODE_21773_length_243_cov_0.917647_g21435_i0 PRJNA1245487 21773 243 0.917647 2.22988221 Gallus gallus 9031 Chordata Chordata 444 3.09e-120   NTclustered gi|2024499479|ref|XR_005849575.1| 9031 g21435 i0 99.588 3.01646090534979 243 1 100 0 1 243 309 551 PREDICTED: Gallus gallus uncharacterized LOC121110655 (LOC121110655), ncRNA blastn 733 444 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
22027746 22027746 PRJNA1245487_P_NODE_10098_length_375_cov_1.599338_g9760_i0 PRJNA1245487 10098 375 1.599338 5.9975175 Apteryx mantelli 2696672 Chordata Chordata 54.7 0.01   NTclustered gi|840016890|emb|LK066393.1| 202946 g9760 i0 100 0.0773333333333333 29 0 8 0 6 34 207549 207577 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold1803 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;