RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1245487" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 5 ✖

bioproject 1

  • PRJNA1245487 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9279431 9279431 PRJNA1245487_P_NODE_7348_length_455_cov_1.628272_g7012_i0 PRJNA1245487 7348 455 1.628272 7.4086376 uncultured Methylomirabilota bacterium 991135 Bacteria Bacteria 270 1.12e-67   NTclustered gi|2874253892|emb|OY970067.1| 991135 g7012 i0 81.493 74.9010989010989 335 57 73 5 23 355 4745871 4745540 MAG: uncultured candidate division NC10 bacterium isolate MFD01231.bin.c.1 genome assembly, chromosome: 1 blastn 34080 270 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         uncultured Methylomirabilota bacterium
13104960 13104960 PRJNA1245487_P_NODE_16771_length_273_cov_1.970000_g16433_i0 PRJNA1245487 16771 273 1.97 5.3781 Candidatus Nomurabacteria bacterium 2052152 Bacteria Bacteria 466 7.55e-127   NTclustered gi|2258875662|gb|CP060232.1| 2052152 g16433 i0 97.455 255.490842490842 275 3 100 4 1 273 963815 963543 MAG: Candidatus Nomurabacteria bacterium isolate HK-STAS-PATE-40 chromosome, complete genome blastn 69749 466 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium
16928354 16928354 PRJNA1245487_P_NODE_21674_length_243_cov_0.917647_g21336_i0 PRJNA1245487 21674 243 0.917647 2.22988221 uncultured Candidatus Saccharibacteria bacterium 179883 Bacteria Bacteria 387 5.29e-103   NTclustered gi|2874253873|emb|OY969928.1| 179883 g21336 i0 95.473 100.197530864198 243 10 99 1 1 242 597317 597075 MAG: uncultured Candidatus Saccharibacteria bacterium isolate MFD04212.bin.c.13 genome assembly, chromosome: 1 blastn 24348 387 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         uncultured Candidatus Saccharibacteria bacterium
18902797 18902797 PRJNA1245487_P_NODE_14655_length_296_cov_1.573991_g14317_i0 PRJNA1245487 14655 296 1.573991 4.65901336 Candidatus Mycosynbacter 2831665 Bacteria Bacteria 455 1.7900000000000002e-123   NTclustered gi|1799615131|gb|CP045921.1| 2665156 g14317 i0 94.595 163.277027027027 296 12 100 3 1 296 220428 220719 Candidatus Mycosynbacter amalyticus isolate JR1 chromosome, complete genome blastn 48330 457 0.99562363238512 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota       Candidatus Mycosynbacter Candidatus Mycosynbacter amalyticus
23303537 23303537 PRJNA1245487_P_NODE_23019_length_227_cov_3.571429_g22681_i0 PRJNA1245487 23019 227 3.571429 8.10714383 Candidatus Saccharimonadia bacterium 2890869 Bacteria Bacteria 363 8.219999999999999e-96   NTclustered gi|2874254002|emb|OY970327.1| 2890869 g22681 i0 95.595 143.145374449339 227 8 99 2 2 227 678454 678229 MAG: Candidatus Saccharimonadia bacterium isolate MFD01275.bin.c.7 genome assembly, chromosome: 1 blastn 32494 363 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia       Candidatus Saccharimonadia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;