RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1241156" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1241156 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11254110 11254110 PRJNA1241156_S_NODE_75869_length_203_cov_4.668750_g75409_i0 PRJNA1241156 75869 203 4.66875 9.4775625 Campylobacter 194 Bacteria Bacteria 375 9.24e-100   NTclustered gi|1483583505|emb|LT631429.1| 204 g75409 i0 100 245.049261083744 203 0 100 0 1 203 29778 29576 Campylobacter showae genome assembly, plasmid: V blastn 49745 375 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
22026702 22026702 PRJNA1241156_S_NODE_40738_length_300_cov_4.692607_g40278_i0 PRJNA1241156 40738 300 4.692607 14.077821 Aliarcobacter trophiarum 708186 Bacteria Bacteria 58.4 6e-4   NTclustered gi|1442793352|gb|CP031367.1| 1032241 g40278 i0 94.595 0.276666666666667 37 2 12 0 111 147 1391381 1391345 Aliarcobacter trophiarum LMG 25534 chromosome, complete genome blastn 83 58.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter trophiarum
25276796 25276796 PRJNA1241156_S_NODE_36580_length_311_cov_7.835821_g36120_i0 PRJNA1241156 36580 311 7.835821 24.36940331 Arcobacter 28196 Bacteria Bacteria 54.7 0.008   NTclustered gi|2907625740|emb|OZ223300.1| 165434 g36120 i0 100 0.186495176848875 29 0 9 0 16 44 439597 439569 MAG: uncultured Arcobacter sp. isolate 7fb66f34-7b41-4cab-a2d2-b84adad47d9e genome assembly, chromosome: 1 blastn 58 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter uncultured Arcobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;