RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1241156" and tax_kingdom = "Pararnavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA1241156 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4177081 4177081 PRJNA1241156_S_NODE_37024_length_310_cov_5.602996_g36564_i0 PRJNA1241156 37024 310 5.602996 17.3692876 Murine leukemia-related retroviruses 99182 Viruses Viruses 525 1.42e-144   NTclustered gi|336087897|emb|FR872816.1| 438045 g36564 i0 98.02 97.758064516129 303 5 98 1 1 303 828 1129 XMRV complete proviral genome, isolate S-162 blastn 30305 525 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Murine leukemia-related retroviruses
13804193 13804193 PRJNA1241156_S_NODE_65391_length_242_cov_2702.467337_g64931_i0 PRJNA1241156 65391 242 2702.467337 6539.97095554 root 1 Root_unresolved Root_unresolved 69.4 2.16e-7   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g64931 i0 100 18.0123966942149 37 0 15 0 2 38 9503 9467 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 4359 69.4 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;