RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1241156" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1241156 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5453401 5453401 PRJNA1241156_S_NODE_3765_length_554_cov_4.461840_g3354_i0 PRJNA1241156 3765 554 4.46184 24.7185936 Candidatus Saccharibacteria genomosp. TM7-H1 2080739 Bacteria Bacteria 1007 0   NTclustered gi|1566427536|gb|CP026537.1| 2080739 g3354 i0 99.458 64.5649819494585 554 3 100 0 1 554 543121 543674 Candidatus Saccharibacteria genomosp. TM7-H1 isolate E1 chromosome blastn 35769 1007 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria genomosp. TM7-H1
8003256 8003256 PRJNA1241156_S_NODE_3987_length_543_cov_5.210000_g3568_i0 PRJNA1241156 3987 543 5.21 28.2903 Candidatus Dojkabacteria bacterium 2099670 Bacteria Bacteria 58.4 0.001   NTclustered gi|2556884375|gb|CP129470.1| 2099670 g3568 i0 94.595 0.0681399631675875 37 2 7 0 405 441 557346 557382 MAG: Candidatus Dojkabacteria bacterium isolate cMAG.26 chromosome, complete genome blastn 37 58.4 1 Bacteria Bacteria candidate phyla             Candidatus Dojkabacteria bacterium
10554020 10554020 PRJNA1241156_S_NODE_36789_length_311_cov_3.003731_g36329_i0 PRJNA1241156 36789 311 3.003731 9.34160341 Candidatus Saccharibacteria genomosp. TM7-H1 2080739 Bacteria Bacteria 575 1.3899999999999995e-159   NTclustered gi|1566427536|gb|CP026537.1| 2080739 g36329 i0 100 296.093247588424 311 0 100 0 1 311 542578 542888 Candidatus Saccharibacteria genomosp. TM7-H1 isolate E1 chromosome blastn 92085 575 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria genomosp. TM7-H1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;