RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where analysis = "blastn", bioproject = "PRJNA1240805" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Viruses · 23 ✖

bioproject 1

  • PRJNA1240805 · 23 ✖

analysis 1

  • blastn · 23 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
349282 349282 PRJNA1240805_P_NODE_1801_length_361_cov_5.589744_g1752_i0 PRJNA1240805 1801 361 5.589744 20.17897584 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 54.7 0.01   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g1752 i0 100 0.0803324099722992 29 0 8 0 1 29 58 86 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 29 54.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1
349313 349313 PRJNA1240805_P_NODE_4121_length_226_cov_14.994350_g4072_i0 PRJNA1240805 4121 226 14.99435 33.887231 Jujube closterovirus 1 3043313 Viruses Viruses 56.5 0.002   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g4072 i0 100 0.256637168141593 30 0 13 0 1 30 6 35 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 58 56.5 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
349334 349334 PRJNA1240805_P_NODE_5561_length_193_cov_6.111111_g5512_i0 PRJNA1240805 5561 193 6.111111 11.79444423 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.005   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g5512 i0 100 0.150259067357513 29 0 15 0 165 193 44 16 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 29 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
4176569 4176569 PRJNA1240805_P_NODE_1844_length_357_cov_13.775974_g1795_i0 PRJNA1240805 1844 357 13.775974 49.18022718 Carlavirus latensdianthi 3427766 Viruses Viruses 52.8 0.034   NTclustered gi|1995060321|gb|MN450069.1| 12164 g1795 i0 100 0.0784313725490196 28 0 8 0 1 28 15 42 Carnation latent virus isolate KL, complete genome blastn 28 52.8 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
8002773 8002773 PRJNA1240805_P_NODE_5907_length_188_cov_3.618705_g5858_i0 PRJNA1240805 5907 188 3.618705 6.8031654 Caudoviricetes sp. 2832643 Viruses Viruses 248 1.91e-61   NTclustered gi|2053118490|tpg|BK020869.1| 2832643 g5858 i0 91.667 0.957446808510638 180 14 96 1 9 188 2229 2407 MAG TPA_asm: Caudoviricetes sp. isolate ctW5v3, partial genome blastn 180 248 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
9277672 9277672 PRJNA1240805_P_NODE_2568_length_296_cov_2.060729_g2519_i0 PRJNA1240805 2568 296 2.060729 6.09975784 Pestivirus bovis 3052619 Viruses Viruses 508 1.36e-139   NTclustered gi|1129880483|gb|KX170609.1| 11099 g2519 i0 97.635 98.7364864864865 296 7 100 0 1 296 616 321 Bovine viral diarrhea virus 1 isolate V087 NS5A gene, partial cds blastn 29226 508 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
11828096 11828096 PRJNA1240805_P_NODE_3390_length_252_cov_4.507389_g3341_i0 PRJNA1240805 3390 252 4.507389 11.35862028 Seadornavirus kadipiroense 3241299 Viruses Viruses 425 1.17e-114   NTclustered gi|2083529913|tpd|BR001721.1| 104580 g3341 i0 100 1.82539682539683 230 0 91 0 23 252 921 692 TPA_asm: Kadipiro virus rat/2019/410 RdRp gene for RNA-dependent RNA polymerase, partial cds blastn 460 425 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Sedoreoviridae Seadornavirus Seadornavirus kadipiroense
13103292 13103292 PRJNA1240805_P_NODE_5791_length_190_cov_2.595745_g5742_i0 PRJNA1240805 5791 190 2.595745 4.9319155 Sopawol virus 3131668 Viruses Viruses 167 5.589999999999999e-37   NTclustered gi|2717323098|gb|PP173969.1| 3131668 g5742 i0 84.615 1.14210526315789 169 25 89 1 3 171 336 169 MAG: Sopawol virus isolate SP1B_k141_158324 genomic sequence blastn 217 167 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Sopawol virus
13103295 13103295 PRJNA1240805_P_NODE_5971_length_187_cov_4.268116_g5922_i0 PRJNA1240805 5971 187 4.268116 7.98137692 Blacklegged tick picorna-like virus 2 2080259 Viruses Viruses 283 5.209999999999999e-72   NTclustered gi|1338075553|gb|MG647772.1| 2080259 g5922 i0 97.59 7.61497326203209 166 3 88 1 1 165 368 203 Blacklegged tick picorna-like virus 2 isolate RTS-11.3 hypothetical protein gene, partial cds blastn 1424 283 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Blacklegged tick picorna-like virus 2
18201172 18201172 PRJNA1240805_P_NODE_3855_length_235_cov_8.059140_g3806_i0 PRJNA1240805 3855 235 8.05914 18.938979 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.006   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g3806 i0 100 0.123404255319149 29 0 12 0 207 235 36 8 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 29 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
18201181 18201181 PRJNA1240805_P_NODE_4715_length_210_cov_13.832298_g4666_i0 PRJNA1240805 4715 210 13.832298 29.0478258 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 331 2.11e-86   NTclustered gi|2754692002|gb|PP872741.1| 3003959 g4666 i0 98.404 0.895238095238095 188 3 90 0 17 204 8443 8630 MAG: Picornavirales sp. isolate TC-PLV-185 MR233-17E/652 genomic sequence blastn 188 331 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3
19475513 19475513 PRJNA1240805_P_NODE_6816_length_175_cov_12.674603_g6767_i0 PRJNA1240805 6816 175 12.674603 22.18055525 Marnaviridae sp. 2715102 Viruses Viruses 65.8 1.89e-6   NTclustered gi|2196309042|gb|MZ679248.1| 2715102 g6767 i0 78.182 0.628571428571429 110 18 61 5 38 144 1216 1110 MAG: Marnaviridae sp. isolate R65-k141_733993 hypothetical protein gene, complete cds blastn 110 65.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Marnaviridae   Marnaviridae sp.
20176686 20176686 PRJNA1240805_P_NODE_3916_length_233_cov_15.913043_g3867_i0 PRJNA1240805 3916 233 15.913043 37.07739019 Tobamovirus 12234 Viruses Viruses 388 1.4e-103   NTclustered gi|1496534726|gb|MH271428.1| 12235 g3867 i0 100 40.3948497854077 210 0 90 0 24 233 834 1043 Cucumber green mottle mosaic virus isolate CG023, complete genome blastn 9412 388 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus viridimaculae
20750980 20750980 PRJNA1240805_P_NODE_5437_length_196_cov_1.557823_g5388_i0 PRJNA1240805 5437 196 1.557823 3.05333308 Pestivirus bovis 3052619 Viruses Viruses 346 6.94e-91   NTclustered gi|575471150|gb|KF772785.1| 11099 g5388 i0 98.469 99.780612244898 196 3 100 0 1 196 7710 7515 Bovine viral diarrhea virus 1 isolate CC13B, complete genome blastn 19557 346 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
20751022 20751022 PRJNA1240805_P_NODE_9137_length_152_cov_4.378641_g9088_i0 PRJNA1240805 9137 152 4.378641 6.65553432 Pijolavirus Pf17397FPD1 3431676 Viruses Viruses 246 5.31e-61   NTclustered gi|2190146233|gb|OM131411.1| 2914026 g9088 i0 96.026 0.993421052631579 151 6 99 0 1 151 9993 10143 Pseudomonas phage Pf17397_F_PD1, complete genome blastn 151 246 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes Autographivirales Autotranscriptaviridae Pijolavirus Pijolavirus Pf17397FPD1
22026218 22026218 PRJNA1240805_P_NODE_5818_length_189_cov_6.978571_g5769_i0 PRJNA1240805 5818 189 6.978571 13.18949919 Sobemovirus sp. 2809869 Viruses Viruses 95.3 2.66e-15   NTclustered gi|2171145024|gb|MZ218240.1| 2809869 g5769 i0 78.205 102.148148148148 156 28 81 6 9 162 5309 5158 MAG: Sobemovirus sp. isolate 267-k141_60134 genomic sequence blastn 19306 95.3 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Sobelivirales Solemoviridae Sobemovirus Sobemovirus sp.
22026226 22026226 PRJNA1240805_P_NODE_6358_length_181_cov_10.401515_g6309_i0 PRJNA1240805 6358 181 10.401515 18.82674215 Parvovirus macaca3116 3117124 Viruses Viruses 52.8 0.015   NTclustered gi|2710391813|tpg|BK066549.1| 3117124 g6309 i0 100 0.154696132596685 28 0 15 0 154 181 29 2 MAG TPA_asm: Parvovirus macaca3116 isolate Parvo3116 genomic sequence blastn 28 52.8 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus macaca3116
22026235 22026235 PRJNA1240805_P_NODE_7258_length_171_cov_2.213115_g7209_i0 PRJNA1240805 7258 171 2.213115 3.78442665 Seadornavirus kadipiroense 3241299 Viruses Viruses 316 4.6e-82   NTclustered gi|2083529923|tpd|BR001726.1| 104580 g7209 i0 100 1 171 0 100 0 1 171 378 548 TPA_asm: Kadipiro virus rat/2019/399 gene for VP6 protein, complete cds blastn 171 316 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Sedoreoviridae Seadornavirus Seadornavirus kadipiroense
22727402 22727402 PRJNA1240805_P_NODE_1498_length_401_cov_78.164773_g1449_i0 PRJNA1240805 1498 401 78.164773 313.44073973 Chatterjeevirus 2732679 Viruses Viruses 58.4 8.26e-4   NTclustered gi|281416165|ref|NC_013651.1| 644563 g1449 i0 89.362 2.81296758104738 47 4 12 1 168 214 34671 34716 Vibrio phage N4, complete genome blastn 1128 58.4 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes Autographivirales Autotranscriptaviridae Chatterjeevirus Chatterjeevirus N4
23301842 23301842 PRJNA1240805_P_NODE_2819_length_281_cov_6.793103_g2770_i0 PRJNA1240805 2819 281 6.793103 19.08861943 Tuatara cloaca-associated tombusvirus-1 2970558 Viruses Viruses 89.8 1.97e-13   NTclustered gi|2284660261|gb|OP080581.1| 2970558 g2770 i0 85.556 3.2135231316726 90 8 31 4 49 134 3177 3265 MAG: Tuatara cloaca-associated tombusvirus-1 isolate T65 RNA-dependent RNA polymerase and coat protein genes, complete cds blastn 903 89.8 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae Tombusvirus Tuatara cloaca-associated tombusvirus-1
23301891 23301891 PRJNA1240805_P_NODE_6439_length_180_cov_7.030534_g6390_i0 PRJNA1240805 6439 180 7.030534 12.6549612 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.004   NTclustered gi|1995060321|gb|MN450069.1| 12164 g6390 i0 100 0.161111111111111 29 0 16 0 152 180 43 15 Carnation latent virus isolate KL, complete genome blastn 29 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
24575765 24575765 PRJNA1240805_P_NODE_4460_length_216_cov_22.155689_g4411_i0 PRJNA1240805 4460 216 22.155689 47.85628824 Seadornavirus kadipiroense 3241299 Viruses Viruses 363 7.749999999999998e-96   NTclustered gi|2083529919|tpd|BR001724.1| 104580 g4411 i0 99.497 2.72222222222222 199 1 92 0 1 199 1277 1079 TPA_asm: Kadipiro virus rat/2019/395 gene for VP4 protein, complete cds blastn 588 363 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Sedoreoviridae Seadornavirus Seadornavirus kadipiroense
24575783 24575783 PRJNA1240805_P_NODE_5660_length_192_cov_1.818182_g5611_i0 PRJNA1240805 5660 192 1.818182 3.49090944 Pestivirus bovis 3052619 Viruses Viruses 294 2.49e-75   NTclustered gi|77799881|dbj|AB111964.2| 233886 g5611 i0 94.271 96.8020833333333 192 11 100 0 1 192 1774 1965 Bovine viral diarrhea virus 839cp gene for poryprotein, partai cds, strain: 839cp blastn 18586 294 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;