RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1240805" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1240805 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
349329 349329 PRJNA1240805_P_NODE_5181_length_200_cov_12.741722_g5132_i0 PRJNA1240805 5181 200 12.741722 25.483444 Heterolobosea sp. 1892890 Heterolobosea other_Eukaryota 187 4.57e-43   NTclustered gi|1059971677|gb|KT892699.1| 1892890 g5132 i0 85.876 54.835 177 24 88 1 1 176 1821 1645 Heterolobosea sp. strain LPG3 18S ribosomal RNA gene, partial sequence blastn 10967 187 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp.
1624146 1624146 PRJNA1240805_P_NODE_7042_length_173_cov_4.153226_g6993_i0 PRJNA1240805 7042 173 4.153226 7.18508098 Neovahlkampfia damariscottae 166956 Heterolobosea other_Eukaryota 71.3 4.01e-8   NTclustered gi|2874368068|gb|PQ819792.1| 166956 g6993 i0 100 0.445086705202312 38 0 22 0 120 157 229 192 Neovahlkampfia damariscottae strain CCAP:1588/7 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 77 71.3 1 Eukaryota Discoba   Heterolobosea     Neovahlkampfiidae Neovahlkampfia Neovahlkampfia damariscottae
10553488 10553488 PRJNA1240805_P_NODE_3109_length_265_cov_3.115741_g3060_i0 PRJNA1240805 3109 265 3.115741 8.25671365 Parafumarolamoeba stagnalis 2872509 Heterolobosea other_Eukaryota 313 1.01e-80   NTclustered gi|2086087549|gb|MZ919148.1| 2872509 g3060 i0 93.81 2.37358490566038 210 10 78 3 59 265 657 866 Parafumarolamoeba stagnalis small subunit ribosomal RNA gene, partial sequence blastn 629 313 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Parafumarolamoeba Parafumarolamoeba stagnalis
10553526 10553526 PRJNA1240805_P_NODE_6149_length_184_cov_7.014815_g6100_i0 PRJNA1240805 6149 184 7.014815 12.9072596 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 106 1.19e-18   NTclustered gi|290988613|ref|XM_002676947.1| 5762 g6100 i0 85.859 0.53804347826087 99 14 54 0 63 161 654 556 Naegleria gruberi rho family small GTPase (NAEGRDRAFT_79812), mRNA blastn 99 106 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
22026220 22026220 PRJNA1240805_P_NODE_5878_length_188_cov_10.244604_g5829_i0 PRJNA1240805 5878 188 10.244604 19.25985552 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 254 4.12e-63   NTclustered gi|290989781|ref|XM_002677470.1| 5762 g5829 i0 94.512 0.872340425531915 164 9 87 0 25 188 936 1099 Naegleria gruberi DEAD/DEAH box helicase (NAEGRDRAFT_83135), mRNA blastn 164 254 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;