RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1240805" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA1240805 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1050469 1050469 PRJNA1240805_P_NODE_4281_length_221_cov_9.872093_g4232_i0 PRJNA1240805 4281 221 9.872093 21.81732553 Deinococcus 1298 Bacteria Bacteria 361 2.8699999999999998e-95   NTclustered gi|1435316362|gb|CP031158.1| 980427 g4232 i0 99.005 187.511312217195 201 2 91 0 1 201 1791892 1792092 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 41440 361 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
3601089 3601089 PRJNA1240805_P_NODE_7163_length_172_cov_2.577236_g7114_i0 PRJNA1240805 7163 172 2.577236 4.43284592 Fervidobacterium 2422 Bacteria Bacteria 302 1.3e-77   NTclustered gi|806984310|ref|NG_042008.1| 2424 g7114 i0 100 95.953488372093 163 0 95 0 10 172 2277 2439 Fervidobacterium nodosum strain Rt17-B1 23S ribosomal RNA gene, complete sequence blastn 16504 302 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium nodosum
9978575 9978575 PRJNA1240805_P_NODE_4248_length_222_cov_7.965318_g4199_i0 PRJNA1240805 4248 222 7.965318 17.68300596 Thermus 270 Bacteria Bacteria 364 2.2299999999999993e-96   NTclustered gi|1608424790|gb|CP038452.1| 2483360 g4199 i0 99.5 130.698198198198 200 1 90 0 23 222 1960729 1960928 Thermus caldilimi strain YIM 78456 chromosome, complete genome blastn 29015 364 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus caldilimi
23301849 23301849 PRJNA1240805_P_NODE_3479_length_248_cov_4.698492_g3430_i0 PRJNA1240805 3479 248 4.698492 11.65226016 Deinococcus sp. AB2017081 3093660 Bacteria Bacteria 287 5.649999999999999e-73   NTclustered gi|2636768990|gb|CP140098.1| 3093660 g3430 i0 95.082 191.903225806452 183 8 76 1 59 240 58051 58233 Deinococcus sp. AB2017081 chromosome, complete genome blastn 47592 287 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. AB2017081

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;