RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1240805" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA1240805 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5452932 5452932 PRJNA1240805_P_NODE_4525_length_215_cov_3.463855_g4476_i0 PRJNA1240805 4525 215 3.463855 7.44728825 Leptotrichia wadei 157687 Bacteria Bacteria 346 7.76e-91   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g4476 i0 98.964 299.167441860465 193 2 90 0 1 193 221940 221748 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 64321 346 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
10553484 10553484 PRJNA1240805_P_NODE_2609_length_293_cov_6.118852_g2560_i0 PRJNA1240805 2609 293 6.118852 17.92823636 Leptotrichia wadei 157687 Bacteria Bacteria 492 1.35e-134   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g2560 i0 99.265 435.9795221843 272 2 93 0 1 272 1756587 1756858 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 127742 492 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
15078086 15078086 PRJNA1240805_P_NODE_5092_length_202_cov_15.045752_g5043_i0 PRJNA1240805 5092 202 15.045752 30.39241904 Fusobacterium 848 Bacteria Bacteria 331 2.02e-86   NTclustered gi|2706407748|gb|CP077116.1| 76857 g5043 i0 100 410.980198019802 179 0 89 0 1 179 709034 708856 Fusobacterium polymorphum strain KCOM1257 chromosome, complete genome blastn 83018 331 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
18201177 18201177 PRJNA1240805_P_NODE_4315_length_221_cov_1.186047_g4266_i0 PRJNA1240805 4315 221 1.186047 2.62116387 Leptotrichia wadei 157687 Bacteria Bacteria 377 2.85e-100   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g4266 i0 99.048 22.0542986425339 210 2 95 0 12 221 2173052 2172843 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 4874 377 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;