RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1240804" and tax_phylum = "Thermomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Thermomicrobiota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1240804 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4878388 4878388 PRJNA1240804_P_NODE_57524_length_208_cov_1.622642_g57158_i0 PRJNA1240804 57524 208 1.622642 3.37509536 Sphaerobacter 2056 Bacteria Bacteria 152 1.75e-32   NTclustered gi|470485500|ref|NR_076704.1| 2057 g57158 i0 83.234 3.12019230769231 167 27 80 1 27 192 1527 1361 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 649 152 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
4878546 4878546 PRJNA1240804_P_NODE_93684_length_177_cov_1.703125_g93318_i0 PRJNA1240804 93684 177 1.703125 3.01453125 Sphaerobacter 2056 Bacteria Bacteria 119 1.45e-22   NTclustered gi|470485500|ref|NR_076704.1| 2057 g93318 i0 92.771 30.2994350282486 83 5 47 1 95 177 269 188 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 5363 119 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
6152739 6152739 PRJNA1240804_P_NODE_134345_length_164_cov_2.417391_g133979_i0 PRJNA1240804 134345 164 2.417391 3.96452124 Sphaerobacter 2056 Bacteria Bacteria 135 1.32e-27   NTclustered gi|470485500|ref|NR_076704.1| 2057 g133979 i0 88.034 49.6463414634146 117 11 71 3 15 130 186 300 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 8142 135 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
6153144 6153144 PRJNA1240804_P_NODE_82825_length_184_cov_2.859259_g82459_i0 PRJNA1240804 82825 184 2.859259 5.26103656 Sphaerobacter 2056 Bacteria Bacteria 195 2.46e-45   NTclustered gi|470485500|ref|NR_076704.1| 2057 g82459 i0 90 132.320652173913 150 15 82 0 17 166 2857 2708 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 24347 195 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
12529022 12529022 PRJNA1240804_P_NODE_86010_length_182_cov_1.857143_g85644_i0 PRJNA1240804 86010 182 1.857143 3.38000026 Sphaerobacter 2056 Bacteria Bacteria 158 3.19e-34   NTclustered gi|470485500|ref|NR_076704.1| 2057 g85644 i0 84.024 18.9065934065934 169 21 90 4 7 170 1798 1631 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 3441 158 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
22727059 22727059 PRJNA1240804_P_NODE_23378_length_293_cov_2.872951_g23012_i0 PRJNA1240804 23378 293 2.872951 8.41774643 Sphaerobacter 2056 Bacteria Bacteria 185 2.5699999999999998e-42   NTclustered gi|470485500|ref|NR_076704.1| 2057 g23012 i0 85.484 22.8327645051195 186 17 60 7 88 264 297 113 Sphaerobacter thermophilus strain S 6022 23S ribosomal RNA gene, complete sequence blastn 6690 185 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus
24573149 24573149 PRJNA1240804_P_NODE_109220_length_169_cov_0.866667_g108854_i0 PRJNA1240804 109220 169 0.866667 1.46466723 Sphaerobacter thermophilus 2057 Bacteria Bacteria 117 4.93e-22   NTclustered gi|269785296|gb|CP001823.1| 479434 g108854 i0 82.576 1.11242603550296 132 23 78 0 7 138 2654018 2654149 Sphaerobacter thermophilus DSM 20745 chromosome 1, complete sequence blastn 188 117 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;