RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1240804" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1240804 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
348687 348687 PRJNA1240804_P_NODE_69141_length_194_cov_2.075862_g68775_i0 PRJNA1240804 69141 194 2.075862 4.02717228 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 113 7.57e-21   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g68775 i0 78.824 0.876288659793814 170 35 87 1 2 170 2529863 2529694 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 170 113 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
10553252 10553252 PRJNA1240804_P_NODE_8909_length_428_cov_3.065963_g8547_i0 PRJNA1240804 8909 428 3.065963 13.12232164 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 372 2.79e-98   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g8547 i0 90.459 399.988317757009 283 26 66 1 7 289 805598 805317 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 171195 372 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
15651097 15651097 PRJNA1240804_P_NODE_35613_length_248_cov_2.532663_g35247_i0 PRJNA1240804 35613 248 2.532663 6.28100424 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 167 7.679999999999999e-37   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g35247 i0 86.076 143.879032258065 158 19 63 3 73 229 2530645 2530490 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 35682 167 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
19475300 19475300 PRJNA1240804_P_NODE_91176_length_179_cov_1.376923_g90810_i0 PRJNA1240804 91176 179 1.376923 2.46469217 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 161 2.41e-35   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g90810 i0 83.708 6.9608938547486 178 22 99 5 1 177 2530537 2530708 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 1246 161 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
20176227 20176227 PRJNA1240804_P_NODE_147956_length_162_cov_0.920354_g147590_i0 PRJNA1240804 147956 162 0.920354 1.49097348 Salinibacter 146918 Bacteria Bacteria 134 4.6800000000000005e-27   NTclustered gi|1419235469|gb|CP030716.1| 146919 g147590 i0 100 4.39506172839506 72 0 44 0 85 156 3086678 3086749 Salinibacter ruber strain P13 chromosome, complete genome blastn 712 134 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber
24575547 24575547 PRJNA1240804_P_NODE_90620_length_179_cov_1.707692_g90254_i0 PRJNA1240804 90620 179 1.707692 3.05676868 Roseithermus sacchariphilus 2893045 Bacteria Bacteria 126 8.81e-25   NTclustered gi|1417721500|gb|CP030158.1| 2893045 g90254 i0 80.838 46.5251396648045 167 26 92 6 16 179 575237 575074 Roseithermus sacchariphilus strain MEBiC09517 chromosome, complete genome blastn 8328 126 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salisaetaceae Roseithermus Roseithermus sacchariphilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;