RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1240804" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1240804 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4175645 4175645 PRJNA1240804_P_NODE_53664_length_213_cov_3.725610_g53298_i0 PRJNA1240804 53664 213 3.72561 7.9355493 Tristoma integrum 92210 Platyhelminthes Platyhelminthes 289 1.3099999999999998e-73   NTclustered gi|2476363796|gb|OQ349751.1| 92210 g53298 i0 93.367 6.16431924882629 196 12 92 1 5 199 4848 4653 Tristoma integrum voucher SMNH 209003 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S large subunit ribosomal RNA gene, partial sequence blastn 1313 289 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Capsalidea Capsalidae Tristoma Tristoma integrum
9276632 9276632 PRJNA1240804_P_NODE_49088_length_220_cov_1.865497_g48722_i0 PRJNA1240804 49088 220 1.865497 4.1040934 Macrostomum poznaniense 2614303 Platyhelminthes Platyhelminthes 390 3.629999999999999e-104   NTclustered gi|1837893564|gb|MT429065.1| 2614303 g48722 i0 99.535 97.1045454545455 215 0 97 1 4 217 14 228 Macrostomum poznaniense voucher MTP_LS_351 large subunit ribosomal RNA gene, partial sequence blastn 21363 390 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum poznaniense
9276689 9276689 PRJNA1240804_P_NODE_51748_length_216_cov_1.652695_g51382_i0 PRJNA1240804 51748 216 1.652695 3.5698212 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 265 2.25e-66   NTclustered gi|926460157|gb|KR132223.1| 282301 g51382 i0 94.22 0.800925925925926 173 10 80 0 30 202 532 360 Macrostomum lignano clone c100550_g1_i1 mRNA sequence blastn 173 265 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
19473883 19473883 PRJNA1240804_P_NODE_21176_length_305_cov_1.457031_g20810_i0 PRJNA1240804 21176 305 1.457031 4.44394455 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 486 6.579999999999998e-133   NTclustered gi|926460157|gb|KR132223.1| 282301 g20810 i0 98.208 88.1704918032787 279 4 91 1 15 292 4894 5172 Macrostomum lignano clone c100550_g1_i1 mRNA sequence blastn 26892 486 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;