RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1240804" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1240804 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8000582 8000582 PRJNA1240804_P_NODE_130727_length_165_cov_0.896552_g130361_i0 PRJNA1240804 130727 165 0.896552 1.4793108 Metamycoplasma faucium 56142 Bacteria Bacteria 270 3.4999999999999993e-68   NTclustered gi|55979963|gb|AY800342.1| 56142 g130361 i0 100 116.466666666667 146 0 88 0 6 151 603 458 Mycoplasma faucium strain ATCC 25293 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 19217 270 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma faucium
8001295 8001295 PRJNA1240804_P_NODE_28607_length_271_cov_1.639640_g28241_i0 PRJNA1240804 28607 271 1.63964 4.4434244 Haploplasma axanthum 29552 Bacteria Bacteria 366 7.81e-97   NTclustered gi|1563809587|emb|LR215048.1| 29552 g28241 i0 91.667 130.881918819188 264 22 99 0 5 268 57623 57886 Acholeplasma axanthum strain NCTC10138 genome assembly, chromosome: 1 blastn 35469 366 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Haploplasma Haploplasma axanthum
13102553 13102553 PRJNA1240804_P_NODE_66411_length_197_cov_1.797297_g66045_i0 PRJNA1240804 66411 197 1.797297 3.54067509 Mariniplasma anaerobium 2735436 Bacteria Bacteria 211 2.66e-50   NTclustered gi|1964073164|dbj|AP024412.1| 2735436 g66045 i0 87.701 46.3401015228426 187 15 93 8 1 184 229455 229274 Mariniplasma anaerobium DNA, complete genome blastn 9129 211 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Mariniplasma Mariniplasma anaerobium
16352763 16352763 PRJNA1240804_P_NODE_69593_length_194_cov_1.317241_g69227_i0 PRJNA1240804 69593 194 1.317241 2.55544754 PVC group 1783257 Bacteria Bacteria 110 9.8e-20   NTclustered gi|299851935|gb|HM135462.1| 292461 g69227 i0 90.361 86.3453608247423 83 8 43 0 15 97 1141 1223 Mycoplasma iguanae strain 2327 23S ribosomal RNA gene, partial sequence blastn 16751 111 0.990990990990991 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma iguanae
19475074 19475074 PRJNA1240804_P_NODE_76756_length_189_cov_1.014286_g76390_i0 PRJNA1240804 76756 189 1.014286 1.91700054 Candidatus Hepatoplasma vulgare 3132032 Bacteria Bacteria 86.1 1.6e-12   NTclustered gi|2416256354|dbj|AP027131.1| 3132032 g76390 i0 85.057 4.91534391534392 87 10 45 3 2 86 478386 478471 MAG: Candidatus Hepatoplasma vulgare Av-JP DNA, complete genome blastn 929 86.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Candidatus Hepatoplasmataceae Candidatus Hepatoplasma Candidatus Hepatoplasma vulgare
20748408 20748408 PRJNA1240804_P_NODE_112137_length_168_cov_1.588235_g111771_i0 PRJNA1240804 112137 168 1.588235 2.6682348 Mycoplasmopsis arginini 2094 Bacteria Bacteria 268 1.29e-67   NTclustered gi|2668342370|gb|CP143577.1| 2094 g111771 i0 98.052 130.39880952381 154 3 92 0 1 154 373640 373793 Mycoplasmopsis arginini strain NCTC 10129 chromosome, complete genome blastn 21907 268 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;