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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA1240804" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1240804 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4175431 4175431 PRJNA1240804_P_NODE_44184_length_229_cov_1.138889_g43818_i0 PRJNA1240804 44184 229 1.138889 2.60805581 Rhizopus delemar 936053 Fungi Fungi 52.8 0.02   NTclustered gi|2797449860|ref|XM_067660666.1| 246409 g43818 i0 100 0.122270742358079 28 0 12 0 188 215 45 18 Rhizopus delemar RA 99-880 uncharacterized protein (RO3G_06076), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus delemar
6153034 6153034 PRJNA1240804_P_NODE_60265_length_204_cov_5.438710_g59899_i0 PRJNA1240804 60265 204 5.43871 11.0949684 Fungi 4751 Fungi Fungi 222 1.28e-53   NTclustered gi|658131632|emb|HF968958.1| 4874 g59899 i0 87.895 47.4117647058824 190 21 93 2 15 203 2004 2192 Gigaspora margarita partial 28S rRNA gene, strain BEG34, isolate spore 4, clone BL2_6_26 blastn 9672 222 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita
8703310 8703310 PRJNA1240804_P_NODE_96667_length_175_cov_1.976190_g96301_i0 PRJNA1240804 96667 175 1.97619 3.4583325 Fungi 4751 Fungi Fungi 300 4.77e-77   NTclustered gi|2516474252|gb|OR122327.1| 4846 g96301 i0 99.394 94.2171428571429 165 1 94 0 11 175 710 874 Rhizopus stolonifer isolate ARM 1033 large subunit ribosomal RNA gene, partial sequence blastn 16488 300 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
10552823 10552823 PRJNA1240804_P_NODE_6789_length_476_cov_15.175644_g6429_i0 PRJNA1240804 6789 476 15.175644 72.23606544 Rhizopus stolonifer 4846 Fungi Fungi 880 0   NTclustered gi|82398553|gb|DQ273817.1| 4846 g6429 i0 100 102.649159663866 476 0 100 0 1 476 2048 1573 Rhizopus stolonifer isolate AFTOL-ID 632 28S ribosomal RNA gene, partial sequence blastn 48861 880 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
13101566 13101566 PRJNA1240804_P_NODE_19531_length_314_cov_183.841509_g19165_i0 PRJNA1240804 19531 314 183.841509 577.26233826 Rhizopus stolonifer 4846 Fungi Fungi 542 1.43e-149   NTclustered gi|82398553|gb|DQ273817.1| 4846 g19165 i0 100 68.3917197452229 293 0 93 0 1 293 2013 2305 Rhizopus stolonifer isolate AFTOL-ID 632 28S ribosomal RNA gene, partial sequence blastn 21475 542 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
13803545 13803545 PRJNA1240804_P_NODE_29291_length_268_cov_21.502283_g28925_i0 PRJNA1240804 29291 268 21.502283 57.62611844 root 1 Root_unresolved Root_unresolved 268 2.24e-67   NTclustered gi|530339809|gb|KC666029.1| 4874 g28925 i0 84.871 101.179104477612 271 35 99 6 1 266 274 543 Gigaspora margarita isolate WDG47 18S ribosomal RNA gene, partial sequence blastn 27116 268 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita
14376214 14376214 PRJNA1240804_P_NODE_12832_length_370_cov_3.420561_g12467_i0 PRJNA1240804 12832 370 3.420561 12.6560757 Rhizopus stolonifer 4846 Fungi Fungi 660 0   NTclustered gi|380865584|gb|JQ606829.1| 4846 g12467 i0 100 94.1405405405405 357 0 96 0 1 357 469 113 Rhizopus stolonifer strain NRRL A-17183 internal transcribed spacer 2 and 28S ribosomal RNA gene, partial sequence blastn 34832 660 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
19475423 19475423 PRJNA1240804_P_NODE_98376_length_174_cov_1.744000_g98010_i0 PRJNA1240804 98376 174 1.744 3.03456 uncultured Glomeromycotina 241622 Fungi Fungi 158 3.02e-34   NTclustered gi|1400015436|gb|MH469415.1| 241622 g98010 i0 92.661 62.735632183908 109 8 63 0 51 159 809 701 Uncultured Glomeromycotina isolate XG8571 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence. blastn 10916 158 1 Eukaryota Opisthokonta Fungi Mucoromycota         uncultured Glomeromycotina
22726822 22726822 PRJNA1240804_P_NODE_10998_length_393_cov_4.566860_g10634_i0 PRJNA1240804 10998 393 4.56686 17.9477598 Eukaryota 2759 Fungi Fungi 701 0   NTclustered gi|1272210360|gb|KY780631.1| 4846 g10634 i0 100 96.3893129770992 379 0 96 0 1 379 1125 747 Rhizopus stolonifer strain cy3 18S ribosomal RNA gene, partial sequence blastn 37881 701 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
23301035 23301035 PRJNA1240804_P_NODE_59639_length_205_cov_1.884615_g59273_i0 PRJNA1240804 59639 205 1.884615 3.8634607500000002 Linnemannia elongata 310910 Fungi Fungi 329 7.39e-86   NTclustered gi|1358186640|gb|MH047197.1| 310910 g59273 i0 98.404 86.0243902439024 188 2 92 1 4 191 4191 4005 Linnemannia elongata 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17635 329 1 Eukaryota Opisthokonta Fungi Mucoromycota Mortierellomycetes Mortierellales Mortierellaceae Linnemannia Linnemannia elongata
24002425 24002425 PRJNA1240804_P_NODE_83379_length_184_cov_1.437037_g83013_i0 PRJNA1240804 83379 184 1.437037 2.64414808 Fungi 4751 Fungi Fungi 228 2.4299999999999996e-55   NTclustered gi|658131632|emb|HF968958.1| 4874 g83013 i0 90.643 16.9565217391304 171 16 93 0 1 171 2179 2009 Gigaspora margarita partial 28S rRNA gene, strain BEG34, isolate spore 4, clone BL2_6_26 blastn 3120 228 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;