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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1240804" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1240804 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
347250 347250 PRJNA1240804_P_NODE_13801_length_360_cov_4.903537_g13436_i0 PRJNA1240804 13801 360 4.903537 17.6527332 Spizellomyces punctatus 109760 Fungi Fungi 313 1.42e-80   NTclustered gi|1027029543|ref|XR_001677161.1| 645134 g13436 i0 94.175 52.0055555555556 206 10 57 2 15 219 3869 4073 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11002), rRNA blastn 18722 313 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
6727230 6727230 PRJNA1240804_P_NODE_99566_length_173_cov_3.564516_g99200_i0 PRJNA1240804 99566 173 3.564516 6.16661268 uncultured Neocallimastigales 325898 Fungi Fungi 150 5.009999999999999e-32   NTclustered gi|1799805380|gb|MN975409.1| 325898 g99200 i0 89.744 66.3352601156069 117 12 68 0 17 133 292 408 Uncultured Neocallimastigales clone ITS1_54_seq22 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence blastn 11476 150 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales     uncultured Neocallimastigales
16926392 16926392 PRJNA1240804_P_NODE_87354_length_181_cov_2.181818_g86988_i0 PRJNA1240804 87354 181 2.181818 3.94909058 uncultured Rhizophydiales 687209 Fungi Fungi 243 8.5e-60   NTclustered gi|1666220530|gb|MH643793.1| 687209 g86988 i0 92.899 93.3977900552486 169 9 92 1 15 180 5017 5185 Uncultured Rhizophydiales isolate SkChyt5 18S ribosomal RNA gene, partial sequence; putative homing endonuclease gene, complete cds; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16905 243 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     uncultured Rhizophydiales
20748643 20748643 PRJNA1240804_P_NODE_12457_length_374_cov_12.673846_g12092_i0 PRJNA1240804 12457 374 12.673846 47.40018404 Quaeritorhiza haematococci 2654861 Fungi Fungi 449 1.0799999999999998e-121   NTclustered gi|1866582718|gb|MT730893.1| 2654861 g12092 i0 88.503 104.745989304813 374 39 99 3 1 372 4128 4499 Quaeritorhiza haematococci isolate JEL0916 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 39175 449 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes   Quaeritorhizaceae Quaeritorhiza Quaeritorhiza haematococci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;