RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1240804" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1240804 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9276715 9276715 PRJNA1240804_P_NODE_52668_length_215_cov_1.162651_g52302_i0 PRJNA1240804 52668 215 1.162651 2.49969965 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 289 1.33e-73   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g52302 i0 92.537 3.70697674418605 201 15 93 0 1 201 891337 891137 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 797 289 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
13101540 13101540 PRJNA1240804_P_NODE_18471_length_321_cov_2.779412_g18105_i0 PRJNA1240804 18471 321 2.779412 8.92191252 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 490 5.39e-134   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g18105 i0 95.455 7.29283489096573 308 13 96 1 15 321 1250970 1250663 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 2341 490 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;