RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA1240804" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 9 ✖

bioproject 1

  • PRJNA1240804 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1049863 1049863 PRJNA1240804_P_NODE_119161_length_167_cov_0.881356_g118795_i0 PRJNA1240804 119161 167 0.881356 1.47186452 Methanobacterium 2160 Archaea Archaea 255 9.950000000000001e-64   NTclustered gi|1297867845|gb|CP017766.1| 59277 g118795 i0 96.732 9.32335329341317 153 5 92 0 1 153 2398264 2398416 Methanobacterium subterraneum strain MO-MB1 chromosome, complete genome blastn 1557 255 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium subterraneum
9276762 9276762 PRJNA1240804_P_NODE_55028_length_212_cov_0.938650_g54662_i0 PRJNA1240804 55028 212 0.93865 1.989938 uncultured Methanobacterium sp. 176306 Archaea Archaea 259 1.02e-64   NTclustered gi|2621703503|emb|OY762552.1| 176306 g54662 i0 90.355 4.56132075471698 197 19 93 0 2 198 1161598 1161794 MAG: uncultured Methanobacterium sp. isolate 3f2017ab-9e69-417f-80a5-32741c1572f8 genome assembly, chromosome: 1 blastn 967 259 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium uncultured Methanobacterium sp.
11253675 11253675 PRJNA1240804_P_NODE_77349_length_188_cov_1.568345_g76983_i0 PRJNA1240804 77349 188 1.568345 2.9484886 Methanobrevibacter 2172 Archaea Archaea 289 1.13e-73   NTclustered gi|2791693311|gb|CP144200.1| 2173 g76983 i0 96.552 107.037234042553 174 6 93 0 15 188 1285789 1285962 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 20123 289 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
16352603 16352603 PRJNA1240804_P_NODE_37713_length_243_cov_1.515464_g37347_i0 PRJNA1240804 37713 243 1.515464 3.68257752 root 1 Root_unresolved Root_unresolved 387 5.29e-103   NTclustered gi|110180137|gb|DQ649323.1| 2162 g37347 i0 96.97 98.6666666666667 231 5 94 2 15 243 67 297 Methanobacterium formicicum strain 14 16S ribosomal RNA gene, partial sequence blastn 23976 387 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
16926537 16926537 PRJNA1240804_P_NODE_94774_length_177_cov_0.828125_g94408_i0 PRJNA1240804 94774 177 0.828125 1.46578125 Methanobacterium sp. ERen5 2977359 Archaea Archaea 154 3.98e-33   NTclustered gi|2264313079|gb|CP099988.1| 2977359 g94408 i0 88.281 2.75706214689266 128 15 72 0 1 128 1456930 1456803 MAG: Methanobacterium sp. ERen5 chromosome, complete genome blastn 488 154 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. ERen5
20176033 20176033 PRJNA1240804_P_NODE_104516_length_170_cov_1.743802_g104150_i0 PRJNA1240804 104516 170 1.743802 2.9644634 Methanobacterium 2160 Archaea Archaea 265 1.68e-66   NTclustered gi|1297867845|gb|CP017766.1| 59277 g104150 i0 98.039 47.5058823529412 153 2 89 1 14 165 1149394 1149546 Methanobacterium subterraneum strain MO-MB1 chromosome, complete genome blastn 8076 265 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium subterraneum
20176292 20176292 PRJNA1240804_P_NODE_24476_length_288_cov_1.907950_g24110_i0 PRJNA1240804 24476 288 1.90795 5.494896 root 1 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|1294447101|gb|CP017803.1| 2173 g24110 i0 97.059 12.5277777777778 34 0 12 1 134 167 265516 265484 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 3608 56.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
23299890 23299890 PRJNA1240804_P_NODE_143179_length_163_cov_0.912281_g142813_i0 PRJNA1240804 143179 163 0.912281 1.48701803 Methanosphaera sp. ISO3-F5 1452353 Archaea Archaea 69.4 1.35e-7   NTclustered gi|2695672494|gb|CP118753.2| 1452353 g142813 i0 77.966 1.4601226993865 118 21 69 3 17 129 1474151 1474268 Methanosphaera sp. ISO3-F5 chromosome, complete genome blastn 238 69.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. ISO3-F5
24001988 24001988 PRJNA1240804_P_NODE_132879_length_165_cov_0.896552_g132513_i0 PRJNA1240804 132879 165 0.896552 1.4793108 Methanobacterium 2160 Archaea Archaea 250 4.5599999999999996e-62   NTclustered gi|1297867845|gb|CP017766.1| 59277 g132513 i0 96.104 17.1454545454545 154 4 92 2 12 163 1409873 1410026 Methanobacterium subterraneum strain MO-MB1 chromosome, complete genome blastn 2829 250 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium subterraneum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;