RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1240804" and tax_clade = "Candidatus Porisulfidus"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Candidatus Porisulfidus · 2 ✖

bioproject 1

  • PRJNA1240804 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
348725 348725 PRJNA1240804_P_NODE_71261_length_192_cov_2.461538_g70895_i0 PRJNA1240804 71261 192 2.461538 4.72615296 uncultured candidatus Porisulfidus sp. 3039487 Bacteria Bacteria 62.1 2.75e-5   NTclustered gi|2893356057|emb|OZ220480.1| 3039487 g70895 i0 97.297 16.46875 37 0 19 1 7 42 1360306 1360342 MAG: uncultured candidatus Porisulfidus sp. isolate 164bb96d-58d1-42e1-9c94-80d65ec326bd genome assembly, chromosome: 1 blastn 3162 62.1 1 Bacteria Candidatus Porisulfidus Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales     uncultured candidatus Porisulfidus sp.
9276313 9276313 PRJNA1240804_P_NODE_35368_length_249_cov_1.555000_g35002_i0 PRJNA1240804 35368 249 1.555 3.87195 uncultured candidatus Porisulfidus sp. 3039487 Bacteria Bacteria 119 2.19e-22   NTclustered gi|2893358403|emb|OZ220694.1| 3039487 g35002 i0 86.364 7.68674698795181 110 13 44 2 3 111 515354 515462 MAG: uncultured candidatus Porisulfidus sp. isolate d7aced61-d1d5-4481-893f-ca77f0084939 genome assembly, chromosome: 1 blastn 1914 119 1 Bacteria Candidatus Porisulfidus Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales     uncultured candidatus Porisulfidus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;