RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1237888" and tax_superkingdom = "Viruses"

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tax_kingdom 2

tax_superkingdom 1

  • Viruses · 6 ✖

bioproject 1

  • PRJNA1237888 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5450134 5450134 PRJNA1237888_S_NODE_2725_length_246_cov_7.395939_g2675_i0 PRJNA1237888 2725 246 7.395939 18.19400994 Sopazov virus 3131687 Viruses Viruses 318 1.98e-82   NTclustered gi|2717323152|gb|PP173988.1| 3131687 g2675 i0 90.756 107.715447154472 238 22 97 0 5 242 59 296 MAG: Sopazov virus isolate SP1B_k141_222276 genomic sequence blastn 26498 318 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Sopazov virus
5450147 5450147 PRJNA1237888_S_NODE_5325_length_179_cov_1.200000_g5275_i0 PRJNA1237888 5325 179 1.2 2.148 Maltschvirus maltsch 2956182 Viruses Viruses 189 1.1099999999999999e-43   NTclustered gi|1220000607|gb|MF417889.1| 2100421 g5275 i0 93.651 38.8324022346369 126 8 70 0 5 130 34640 34765 Uncultured Caudovirales phage clone 10S_14, partial genome blastn 6951 189 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Peduoviridae Maltschvirus Maltschvirus maltsch
6724523 6724523 PRJNA1237888_S_NODE_966_length_404_cov_2.115493_g916_i0 PRJNA1237888 966 404 2.115493 8.54659172 Caudoviricetes sp. 2832643 Viruses Viruses 52.8 0.039   NTclustered gi|2052185182|tpg|BK055805.1| 2832643 g916 i0 100 0.0693069306930693 28 0 7 0 321 348 11502 11475 MAG TPA_asm: Caudoviricetes sp. isolate ctOXt3, partial genome blastn 28 52.8 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
18198348 18198348 PRJNA1237888_S_NODE_2255_length_271_cov_1.873874_g2205_i0 PRJNA1237888 2255 271 1.873874 5.07819854 Bacteriophage sp. 38018 Viruses Viruses 54.7 0.007   NTclustered gi|2053145878|tpg|BK018878.1| 38018 g2205 i0 100 0.107011070110701 29 0 11 0 193 221 11691 11663 MAG TPA_asm: Bacteriophage sp. isolate ctgfu33, partial genome blastn 29 54.7 1 Viruses               Bacteriophage sp.
22023474 22023474 PRJNA1237888_S_NODE_6838_length_165_cov_0.896552_g6788_i0 PRJNA1237888 6838 165 0.896552 1.4793108 Potyvirus papayanuli 3240577 Viruses Viruses 239 9.87e-59   NTclustered gi|161168458|dbj|AB369277.1| 12205 g6788 i0 92.727 32.6969696969697 165 12 100 0 1 165 5646 5810 Papaya ringspot virus genomic RNA, complete genome, strain: Korean watermelon blastn 5395 239 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus papayanuli
24001844 24001844 PRJNA1237888_S_NODE_6779_length_165_cov_0.896552_g6729_i0 PRJNA1237888 6779 165 0.896552 1.4793108 Pahexavirus 1982251 Viruses Viruses 300 4.46e-77   NTclustered gi|330858398|ref|NC_015454.1| 504501 g6729 i0 99.394 99.8909090909091 165 1 100 0 1 165 6125 6289 Propionibacterium phage PAD20 endogenous virus, complete genome blastn 16482 300 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes     Pahexavirus Pahexavirus PAD20

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;