RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1237888" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1237888 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1049735 1049735 PRJNA1237888_S_NODE_2081_length_283_cov_2.316239_g2031_i0 PRJNA1237888 2081 283 2.316239 6.55495637 root 1 Root_unresolved Root_unresolved 305 1.82e-78   NTclustered gi|28395343|gb|AY190668.1| 56 g2031 i0 87.085 166.759717314488 271 33 95 2 1 269 451 721 Polyangium cellulosum strain So9733-1 clone 3 16S ribosomal RNA and 23S ribosomal RNA genes, partial sequence blastn 47193 305 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
2897531 2897531 PRJNA1237888_S_NODE_6923_length_164_cov_1.565217_g6873_i0 PRJNA1237888 6923 164 1.565217 2.56695588 Labilithrix luteola 1391654 Bacteria Bacteria 302 1.23e-77   NTclustered gi|913610804|gb|CP012333.1| 1391654 g6873 i0 100 167.006097560976 163 0 99 0 2 164 3944269 3944107 Labilithrix luteola strain DSM 27648, complete genome blastn 27389 302 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
22023461 22023461 PRJNA1237888_S_NODE_4698_length_190_cov_1.411348_g4648_i0 PRJNA1237888 4698 190 1.411348 2.6815612 Labilithrix luteola 1391654 Bacteria Bacteria 224 3.2699999999999995e-54   NTclustered gi|913610804|gb|CP012333.1| 1391654 g4648 i0 88.083 434.294736842105 193 18 100 5 1 190 3942059 3941869 Labilithrix luteola strain DSM 27648, complete genome blastn 82516 224 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
22726775 22726775 PRJNA1237888_S_NODE_818_length_440_cov_1.856777_g768_i0 PRJNA1237888 818 440 1.856777 8.1698188 Sorangium 39643 Bacteria Bacteria 566 1.2299999999999998e-156   NTclustered gi|507148211|ref|NR_103018.1| 56 g768 i0 89.91 143.040909090909 446 36 100 9 1 440 1336 1778 Sorangium cellulosum strain So ce 56 23S ribosomal RNA gene, complete sequence blastn 62938 566 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;