RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1237888" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 7 ✖

bioproject 1

  • PRJNA1237888 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2897532 2897532 PRJNA1237888_S_NODE_7083_length_164_cov_0.886957_g7033_i0 PRJNA1237888 7083 164 0.886957 1.45460948 Deinococcus sp. QL22 2939437 Bacteria Bacteria 243 7.57e-60   NTclustered gi|2238962291|gb|CP097153.1| 2939437 g7033 i0 93.293 1 164 11 100 0 1 164 391215 391052 Deinococcus sp. QL22 plasmid unnamed3, complete sequence blastn 164 243 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. QL22
7427704 7427704 PRJNA1237888_S_NODE_1706_length_317_cov_1.981343_g1656_i0 PRJNA1237888 1706 317 1.981343 6.28085731 Thermus 270 Bacteria Bacteria 497 3.17e-136   NTclustered gi|1614035200|gb|MH827786.1| 275 g1656 i0 96.066 98.1324921135647 305 12 96 0 11 315 482 178 Thermus sp. strain 0615-1 16S ribosomal RNA gene, partial sequence blastn 31108 499 0.995991983967936 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp.
7427721 7427721 PRJNA1237888_S_NODE_5566_length_175_cov_1.928571_g5516_i0 PRJNA1237888 5566 175 1.928571 3.37499925 Thermus 270 Bacteria Bacteria 316 4.74e-82   NTclustered gi|470468782|ref|NR_076136.1| 37636 g5516 i0 99.425 143.177142857143 174 1 99 0 2 175 1941 2114 Thermus scotoductus strain SA-01 23S ribosomal RNA gene, complete sequence blastn 25056 316 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus
13100483 13100483 PRJNA1237888_S_NODE_2971_length_235_cov_1.301075_g2921_i0 PRJNA1237888 2971 235 1.301075 3.05752625 Thermus aquaticus 271 Bacteria Bacteria 224 4.219999999999999e-54   NTclustered gi|939575972|gb|CP010822.1| 498848 g2921 i0 84.519 148.412765957447 239 24 99 13 1 233 45406 45637 Thermus aquaticus Y51MC23, complete genome blastn 34877 224 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
15649655 15649655 PRJNA1237888_S_NODE_6393_length_167_cov_1.186441_g6343_i0 PRJNA1237888 6393 167 1.186441 1.98135647 Trueperaceae bacterium 2026798 Bacteria Bacteria 185 1.3199999999999999e-42   NTclustered gi|2621701816|emb|OY759346.1| 2026798 g6343 i0 86.747 166.317365269461 166 22 99 0 1 166 3599801 3599966 MAG: Trueperaceae bacterium isolate dd143a13-9bf8-4812-ba0e-a3cf349d91ff genome assembly, chromosome: 1 blastn 27775 185 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
18901297 18901297 PRJNA1237888_S_NODE_4835_length_187_cov_1.869565_g4785_i0 PRJNA1237888 4835 187 1.869565 3.49608655 Thermus 270 Bacteria Bacteria 335 1.4199999999999996e-87   NTclustered gi|470468782|ref|NR_076136.1| 37636 g4785 i0 98.93 143.978609625668 187 2 100 0 1 187 711 897 Thermus scotoductus strain SA-01 23S ribosomal RNA gene, complete sequence blastn 26924 335 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus
18901313 18901313 PRJNA1237888_S_NODE_6575_length_166_cov_1.111111_g6525_i0 PRJNA1237888 6575 166 1.111111 1.84444426 Deinococcus 1298 Bacteria Bacteria 302 1.2500000000000001e-77   NTclustered gi|730601855|gb|CP010028.1| 57497 g6525 i0 99.398 209.632530120482 166 1 100 0 1 166 69904 69739 Deinococcus swuensis strain DY59, complete genome blastn 34799 302 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiopugnans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;