RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1237347" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1237347 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5440958 5440958 PRJNA1237347_P_NODE_160885_length_500_cov_2.648712_g154324_i0 PRJNA1237347 160885 500 2.648712 13.24356 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 409 2.5199999999999997e-109   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g154324 i0 81.657 110.074 507 79 100 13 1 500 5033151 5032652 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 55037 409 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
20742801 20742801 PRJNA1237347_P_NODE_34017_length_1327_cov_2.768740_g30194_i0 PRJNA1237347 34017 1327 2.76874 36.7411798 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 56.5 0.01   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g30194 i0 100 0.0226073850791258 30 0 2 0 463 492 7806519 7806490 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 30 56.5 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
24571218 24571218 PRJNA1237347_P_NODE_536760_length_243_cov_0.905882_g530187_i0 PRJNA1237347 536760 243 0.905882 2.20129326 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 198 2.6599999999999998e-46   NTclustered gi|2874254122|emb|OY970207.1| 3107663 g530187 i0 81.855 101.123456790123 248 34 99 11 3 243 479900 480143 MAG: Candidatus Eremiobacteraeota bacterium isolate MFD10113.bin.c.5 genome assembly, chromosome: 1 blastn 24573 198 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;