RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA1237347" and tax_phylum = "Thermotogota"

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tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1237347 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9271012 9271012 PRJNA1237347_P_NODE_421248_length_271_cov_1.166667_g414675_i0 PRJNA1237347 421248 271 1.166667 3.16166757 Kosmotoga olearia 651457 Bacteria Bacteria 52.8 0.025   NTclustered gi|239505242|gb|CP001634.1| 521045 g414675 i0 100 0.103321033210332 28 0 10 0 220 247 982054 982081 Kosmotoga olearia TBF 19.5.1, complete genome blastn 28 52.8 1 Bacteria   Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Kosmotoga Kosmotoga olearia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;