RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1237347" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1237347 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
344401 344401 PRJNA1237347_P_NODE_508781_length_246_cov_3.248555_g502208_i0 PRJNA1237347 508781 246 3.248555 7.9914453 Rhodothermales bacterium 2306054 Bacteria Bacteria 54.7 0.006   NTclustered gi|2621702557|emb|OY760427.1| 2306054 g502208 i0 100 0.117886178861789 29 0 12 0 206 234 1156397 1156369 MAG: Rhodothermales bacterium isolate 1504ddc0-b432-43e2-af37-a45191a88aeb genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
13097874 13097874 PRJNA1237347_P_NODE_485191_length_249_cov_2.590909_g478618_i0 PRJNA1237347 485191 249 2.590909 6.45136341 Rhodothermales bacterium 2306054 Bacteria Bacteria 372 1.52e-98   NTclustered gi|2893358395|emb|OZ220686.1| 2306054 g478618 i0 93.574 737.586345381526 249 16 100 0 1 249 1666331 1666579 MAG: Rhodothermales bacterium isolate 312d6c01-350c-491a-87ad-f3958f88b76c genome assembly, chromosome: 1 blastn 183659 372 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
15077135 15077135 PRJNA1237347_P_NODE_567572_length_220_cov_12.653061_g560998_i0 PRJNA1237347 567572 220 12.653061 27.8367342 Bacteria 2 Bacteria Bacteria 213 8.44e-51   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g560998 i0 84.404 174.890909090909 218 33 99 1 3 220 2903916 2904132 Rhodothermaceae bacterium RA chromosome, complete genome blastn 38476 213 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA
18196711 18196711 PRJNA1237347_P_NODE_540235_length_243_cov_0.905882_g533662_i0 PRJNA1237347 540235 243 0.905882 2.20129326 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 261 3.34e-65   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g533662 i0 86.122 42.4938271604938 245 30 100 4 1 243 3196160 3196402 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 10326 261 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
22019270 22019270 PRJNA1237347_P_NODE_401518_length_279_cov_1.286408_g394945_i0 PRJNA1237347 401518 279 1.286408 3.58907832 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 200 8.67e-47   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g394945 i0 79.787 16.0824372759857 282 51 100 5 1 279 2833798 2833520 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 4487 200 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;