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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA1237347" and tax_phylum = "Rhodophyta"

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tax_superkingdom 1

tax_phylum 1

  • Rhodophyta · 18 ✖

bioproject 1

  • PRJNA1237347 · 18 ✖

analysis 1

  • blastn · 18 ✖

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1049679 1049679 PRJNA1237347_P_NODE_88941_length_734_cov_180.673222_g82706_i0 PRJNA1237347 88941 734 180.673222 1326.14144948 Metazoa 33208 Rhodophyta other_Eukaryota 119 7.1400000000000005e-22   NTclustered gi|1839347089|gb|MT325691.1| 48978 g82706 i0 89.474 13.6376021798365 95 9 13 1 638 731 538 632 Jania rubens voucher VPF00439 28S ribosomal RNA gene, partial sequence blastn 10010 119 1 Eukaryota     Rhodophyta Florideophyceae Corallinales Corallinaceae Jania Jania rubens
1612506 1612506 PRJNA1237347_P_NODE_173422_length_476_cov_7.074442_g166851_i0 PRJNA1237347 173422 476 7.074442 33.67434392 Bangia fuscopurpurea 101920 Rhodophyta other_Eukaryota 67.6 1.65e-6   NTclustered gi|998751923|gb|KR010938.1| 101920 g166851 i0 93.333 0.945378151260504 45 3 9 0 1 45 5252 5208 Bangia fuscopurpurea isolate XLS large subunit ribosomal RNA gene, partial sequence blastn 450 67.6 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Bangia Bangia fuscopurpurea
1616684 1616684 PRJNA1237347_P_NODE_380762_length_288_cov_1.130233_g374189_i0 PRJNA1237347 380762 288 1.130233 3.25507104 Webervanbossea splachnoides 81619 Rhodophyta other_Eukaryota 141 5.53e-29   NTclustered gi|116266797|gb|DQ873288.1| 81619 g374189 i0 88.136 6.02430555555556 118 14 41 0 170 287 672 789 Webervanbossea splachnoides voucher GWS002435 large subunit ribosomal RNA gene, partial sequence blastn 1735 141 1 Eukaryota     Rhodophyta Florideophyceae Rhodymeniales Faucheaceae Webervanbossea Webervanbossea splachnoides
2890435 2890435 PRJNA1237347_P_NODE_251403_length_373_cov_2.006667_g244830_i0 PRJNA1237347 251403 373 2.006667 7.48486791 Plocamium cartilagineum 31452 Rhodophyta other_Eukaryota 174 7.26e-39   NTclustered gi|612407963|gb|KJ398160.1| 31452 g244830 i0 81.517 53.9008042895442 211 39 57 0 148 358 12289 12079 Plocamium cartilagineum mitochondrion, partial genome blastn 20105 174 1 Eukaryota     Rhodophyta Florideophyceae Plocamiales Plocamiaceae Plocamium Plocamium cartilagineum
6714874 6714874 PRJNA1237347_P_NODE_140926_length_545_cov_4.239407_g134387_i0 PRJNA1237347 140926 545 4.239407 23.10476815 Gracilariophila oryzoides 42480 Rhodophyta other_Eukaryota 119 5.21e-22   NTclustered gi|1102131068|gb|KX687879.1| 42480 g134387 i0 77.103 0.981651376146789 214 43 39 5 160 370 12137 11927 Gracilariophila oryzoides mitochondrion, complete genome blastn 535 119 1 Eukaryota     Rhodophyta Florideophyceae Gracilariales Gracilariaceae Gracilariophila Gracilariophila oryzoides
7426129 7426129 PRJNA1237347_P_NODE_303686_length_331_cov_2.337209_g297113_i0 PRJNA1237347 303686 331 2.337209 7.73616179 Bangiaceae 31345 Rhodophyta other_Eukaryota 71.3 8.61e-8   NTclustered gi|645928506|gb|KJ708766.1| 182771 g297113 i0 88.136 4.33836858006042 59 7 32 0 205 263 10676 10618 Pyropia perforata voucher PB-A 684 mitochondrion, complete genome blastn 1436 71.3 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia perforata
9265588 9265588 PRJNA1237347_P_NODE_156368_length_509_cov_46.467890_g149810_i0 PRJNA1237347 156368 509 46.46789 236.5215601 Pyropia haitanensis 1262161 Rhodophyta other_Eukaryota 379 2.01e-100   NTclustered gi|1026716609|gb|KU179277.1| 1262161 g149810 i0 82.103 87.127701375245607 447 76 87 3 36 480 488 44 Pyropia haitanensis calmodulin 1 mRNA, complete cds blastn 44348 379 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia haitanensis
10542310 10542310 PRJNA1237347_P_NODE_193909_length_442_cov_3.579946_g187337_i0 PRJNA1237347 193909 442 3.579946 15.82336132 Laurencia snackeyi 1858662 Rhodophyta other_Eukaryota 375 2.2299999999999998e-99   NTclustered gi|1203234110|gb|MF093985.1| 1858662 g187337 i0 82.127 100.151583710407 442 75 99 4 1 440 862 1301 Laurencia snackeyi isolate JFC0032 cytochrome oxidase subunit 1 (cox1) gene, complete cds; mitochondrial blastn 44267 375 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Laurencia Laurencia snackeyi
10550368 10550368 PRJNA1237347_P_NODE_86189_length_749_cov_2.600592_g79987_i0 PRJNA1237347 86189 749 2.600592 19.47843408 Pyropia seriata 79731 Rhodophyta other_Eukaryota 1162 0   NTclustered gi|922081034|gb|KP241942.1| 79731 g79987 i0 94.66 99.2202937249666 749 40 100 0 1 749 696 1444 Pyropia seriata heat shock protein 70c (HSP70c) mRNA, complete cds blastn 74316 1162 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia seriata
11817183 11817183 PRJNA1237347_P_NODE_199210_length_434_cov_846.002770_g192638_i0 PRJNA1237347 199210 434 846.00277 3671.6520218 Compsopogon caeruleus 31354 Rhodophyta other_Eukaryota 165 5.16e-36   NTclustered gi|1812772006|gb|MT117933.1| 31354 g192638 i0 90.476 27.8847926267281 126 10 29 2 1 126 4117 4240 Compsopogon caeruleus strain SAG36.94 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12102 165 1 Eukaryota     Rhodophyta Compsopogonophyceae Compsopogonales Compsopogonaceae Compsopogon Compsopogon caeruleus
14370690 14370690 PRJNA1237347_P_NODE_356852_length_299_cov_2.876106_g350279_i0 PRJNA1237347 356852 299 2.876106 8.59955694 Antithamnionella miharai 536589 Rhodophyta other_Eukaryota 99 3.52e-16   NTclustered gi|2666692773|ref|NC_085547.1| 536589 g350279 i0 75.362 3.33779264214047 207 49 69 2 73 278 22609 22814 Antithamnionella miharai strain MABIK-LAS-00000332 mitochondrion, complete genome blastn 998 99 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Ceramiaceae Antithamnionella Antithamnionella miharai
15641244 15641244 PRJNA1237347_P_NODE_191013_length_447_cov_1.374332_g184441_i0 PRJNA1237347 191013 447 1.374332 6.14326404 Centroceras gasparrinii 371099 Rhodophyta other_Eukaryota 52.8 0.043   NTclustered gi|2666692877|ref|NC_085551.1| 371099 g184441 i0 96.774 0.0693512304250559 31 1 7 0 411 441 2889 2919 Centroceras gasparrinii strain MABIK-LAS-00000294 mitochondrion, complete genome blastn 31 52.8 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Ceramiaceae Centroceras Centroceras gasparrinii
15641798 15641798 PRJNA1237347_P_NODE_215813_length_412_cov_2.805310_g209241_i0 PRJNA1237347 215813 412 2.80531 11.5578772 Pyropia seriata 79731 Rhodophyta other_Eukaryota 326 2.11e-84   NTclustered gi|922081034|gb|KP241942.1| 79731 g209241 i0 88.806 14.2621359223301 268 26 65 3 146 411 118 383 Pyropia seriata heat shock protein 70c (HSP70c) mRNA, complete cds blastn 5876 326 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia seriata
16351600 16351600 PRJNA1237347_P_NODE_467533_length_252_cov_1.955307_g460960_i0 PRJNA1237347 467533 252 1.955307 4.92737364 Rhodophyta 2763 Rhodophyta other_Eukaryota 154 6.09e-33   NTclustered gi|746001632|ref|NC_026056.1| 2822 g460960 i0 83.14 9.37301587301587 172 26 67 3 9 178 20525 20355 Palmaria palmata mitochondrion, complete genome blastn 2362 154 1 Eukaryota     Rhodophyta Florideophyceae Palmariales Palmariaceae Palmaria Palmaria palmata
16917400 16917400 PRJNA1237347_P_NODE_288654_length_342_cov_1.438662_g282081_i0 PRJNA1237347 288654 342 1.438662 4.92022404 Heterosiphonia pulchra 189631 Rhodophyta other_Eukaryota 213 1.4e-50   NTclustered gi|2666692949|ref|NC_085554.1| 189631 g282081 i0 79.31 18.5906432748538 319 54 92 9 19 331 18180 17868 Heterosiphonia pulchra strain MABIK-LAS-00000388 mitochondrion, complete genome blastn 6358 213 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Dasyaceae Heterosiphonia Heterosiphonia pulchra
17625097 17625097 PRJNA1237347_P_NODE_136894_length_555_cov_72.068465_g130360_i0 PRJNA1237347 136894 555 72.068465 399.97998075 Cyanidiales 265318 Rhodophyta other_Eukaryota 169 5.2000000000000004e-37   NTclustered gi|133755338|ref|NC_000887.3| 45157 g130360 i0 80.087 5.47027027027027 231 43 41 3 280 509 24602 24830 Cyanidioschyzon merolae mitochondrion, complete genome blastn 3036 169 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae
20738656 20738656 PRJNA1237347_P_NODE_141377_length_544_cov_3.059448_g134838_i0 PRJNA1237347 141377 544 3.059448 16.64339712 Gelidiella acerosa 28867 Rhodophyta other_Eukaryota 69.4 5.31e-7   NTclustered gi|1980524013|ref|NC_052712.1| 28867 g134838 i0 79.808 0.696691176470588 104 14 19 6 33 133 1462 1363 Gelidiella acerosa voucher CNU026920 mitochondrion, complete genome blastn 379 69.4 1 Eukaryota     Rhodophyta Florideophyceae Gelidiales Gelidiellaceae Gelidiella Gelidiella acerosa
20740079 20740079 PRJNA1237347_P_NODE_205837_length_425_cov_2.389205_g199265_i0 PRJNA1237347 205837 425 2.389205 10.15412125 Pyropia seriata 79731 Rhodophyta other_Eukaryota 440 7.479999999999997e-119   NTclustered gi|922081034|gb|KP241942.1| 79731 g199265 i0 89.205 0.894117647058824 352 38 83 0 74 425 2021 1670 Pyropia seriata heat shock protein 70c (HSP70c) mRNA, complete cds blastn 380 440 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia seriata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;