RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1237347" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1237347 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13094398 13094398 PRJNA1237347_P_NODE_307631_length_329_cov_1.164062_g301058_i0 PRJNA1237347 307631 329 1.164062 3.82976398 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 224 6.2e-54   NTclustered gi|294874272|ref|XM_002766837.1| 423536 g301058 i0 79.56 81.4224924012158 318 62 97 1 1 318 1353 1039 Perkinsus marinus ATCC 50983 heat shock protein 70 precursor, putative, mRNA blastn 26788 224 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
24562604 24562604 PRJNA1237347_P_NODE_107040_length_652_cov_7.692573_g100590_i0 PRJNA1237347 107040 652 7.692573 50.15557596 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 204 1.6899999999999999e-47   NTclustered gi|294881230|ref|XM_002769261.1| 423536 g100590 i0 76.699 26.9401840490798 412 69 62 24 148 550 444 51 Perkinsus marinus ATCC 50983 60S ribosomal protein L27a, putative, mRNA blastn 17565 204 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
24564175 24564175 PRJNA1237347_P_NODE_174780_length_474_cov_1.907731_g168209_i0 PRJNA1237347 174780 474 1.907731 9.04264494 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.013   NTclustered gi|294875641|ref|XM_002767369.1| 423536 g168209 i0 100 0.0611814345991561 29 0 6 0 342 370 1479 1451 Perkinsus marinus ATCC 50983 RNA-binding protein, putative, mRNA blastn 29 54.7 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
24571033 24571033 PRJNA1237347_P_NODE_52700_length_1022_cov_2.885142_g47611_i0 PRJNA1237347 52700 1022 2.885142 29.48615124 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.029   NTclustered gi|294930640|ref|XM_002779585.1| 423536 g47611 i0 100 0.0283757338551859 29 0 3 0 476 504 130 102 Perkinsus marinus ATCC 50983 Histidyl-tRNA synthetase, putative, mRNA blastn 29 54.7 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;