RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1237347" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1237347 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
341751 341751 PRJNA1237347_P_NODE_367201_length_294_cov_1.484163_g360628_i0 PRJNA1237347 367201 294 1.484163 4.36343922 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 60.2 1.63e-4   NTclustered gi|2794861410|ref|XM_067923068.1| 135588 g360628 i0 100 0.108843537414966 32 0 11 0 42 73 3488 3457 Histomonas meleagridis uncharacterized protein (GO595_000938), partial mRNA blastn 32 60.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
14375030 14375030 PRJNA1237347_P_NODE_72872_length_834_cov_20.986859_g66980_i0 PRJNA1237347 72872 834 20.986859 175.03040406 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 86.1 8.27e-12   NTclustered gi|2794895333|ref|XM_067923466.1| 135588 g66980 i0 82.407 0.169064748201439 108 10 12 6 51 152 663 559 Histomonas meleagridis XYPPX repeat family protein (GO595_009747), partial mRNA blastn 141 86.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
24568595 24568595 PRJNA1237347_P_NODE_394180_length_282_cov_1.468900_g387607_i0 PRJNA1237347 394180 282 1.4689 4.142298 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 54.7 0.007   NTclustered gi|2806438132|ref|XM_068513578.1| 1144522 g387607 i0 100 0.102836879432624 29 0 10 0 91 119 1603 1575 Tritrichomonas foetus uncharacterized protein (TRFO_41097), partial mRNA blastn 29 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;