RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1237347" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1237347 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5447573 5447573 PRJNA1237347_P_NODE_490525_length_249_cov_0.875000_g483952_i0 PRJNA1237347 490525 249 0.875 2.17875 Victivallaceae bacterium 2793042 Bacteria Bacteria 52.8 0.023   NTclustered gi|2621704067|emb|OY761536.1| 2793042 g483952 i0 96.875 0.1285140562249 32 0 12 1 62 92 2351350 2351319 MAG: Victivallaceae bacterium isolate e353ef71-700a-4510-b67c-5bed4426050c genome assembly, chromosome: 1 blastn 32 52.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae   Victivallaceae bacterium
11823054 11823054 PRJNA1237347_P_NODE_500530_length_248_cov_0.880000_g493957_i0 PRJNA1237347 500530 248 0.88 2.1824 Lentisphaeria bacterium 2053569 Bacteria Bacteria 102 2.2e-17   NTclustered gi|2189495548|gb|CP091727.1| 2053569 g493957 i0 86.316 3.24596774193548 95 11 38 2 125 218 1429927 1430020 MAG: Lentisphaeria bacterium isolate nC33_lr_bin.207.fa chromosome blastn 805 102 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
14374426 14374426 PRJNA1237347_P_NODE_56032_length_985_cov_3.267544_g50750_i0 PRJNA1237347 56032 985 3.267544 32.1853084 uncultured Lentisphaerota bacterium 278095 Bacteria Bacteria 167 3.4200000000000003e-36   NTclustered gi|164653414|gb|EU350875.1| 278095 g50750 i0 79.661 28.0791878172589 236 45 24 3 661 895 670 903 Uncultured Lentisphaerae bacterium clone HAL-T-18 16S ribosomal RNA gene, partial sequence blastn 27658 167 1 Bacteria PVC group Pseudomonadati Lentisphaerota         uncultured Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;