RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1237347" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1237347 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13098141 13098141 PRJNA1237347_P_NODE_500211_length_248_cov_0.880000_g493638_i0 PRJNA1237347 500211 248 0.88 2.1824 Ignavibacterium sp. 2651167 Bacteria Bacteria 436 5.3e-118   NTclustered gi|2314740639|dbj|AP026678.1| 2651167 g493638 i0 98.387 2 248 4 100 0 1 248 3167334 3167087 MAG: Ignavibacterium sp. KatS3mg037 DNA, complete genome blastn 496 436 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium sp.
17625688 17625688 PRJNA1237347_P_NODE_256934_length_368_cov_1.861017_g250361_i0 PRJNA1237347 256934 368 1.861017 6.84854256 Pseudomonadati 3379134 Bacteria Bacteria 409 1.8e-109   NTclustered gi|1938788434|gb|CP054181.1| 2053306 g250361 i0 89.634 195.184782608696 328 25 88 7 45 368 1602449 1602771 Ignavibacteria bacterium isolate H1_BAC2 chromosome blastn 71828 409 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
23292798 23292798 PRJNA1237347_P_NODE_292879_length_339_cov_1.443609_g286306_i0 PRJNA1237347 292879 339 1.443609 4.89383451 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 252 2.94e-62   NTclustered gi|1850842921|gb|CP053447.1| 2026749 g286306 i0 81.579 48.4513274336283 304 56 90 0 34 337 2450112 2449809 Ignavibacteriae bacterium isolate IGN3 chromosome blastn 16425 252 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;