RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1237347" and tax_phylum = "Hemichordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1237347 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9269803 9269803 PRJNA1237347_P_NODE_359128_length_298_cov_1.764444_g352555_i0 PRJNA1237347 359128 298 1.764444 5.25804312 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 52.8 0.028   NTclustered gi|585650711|ref|XM_006814568.1| 10224 g352555 i0 100 0.0939597315436242 28 0 9 0 260 287 486 513 PREDICTED: Saccoglossus kowalevskii uncharacterized LOC102808132 (LOC102808132), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
10547028 10547028 PRJNA1237347_P_NODE_426629_length_268_cov_4.656410_g420056_i0 PRJNA1237347 426629 268 4.65641 12.4791788 Ptychodera flava 63121 Hemichordata other_Eukaryota 52.8 0.025   NTclustered gi|2875755042|ref|XM_070707860.1| 63121 g420056 i0 100 1.14925373134328 28 0 10 0 154 181 4162 4135 PREDICTED: Ptychodera flava coiled-coil domain-containing protein 78-like (LOC139139093), transcript variant X1, mRNA blastn 308 52.8 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
16919852 16919852 PRJNA1237347_P_NODE_411254_length_275_cov_1.143564_g404681_i0 PRJNA1237347 411254 275 1.143564 3.144801 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 193 1.43e-44   NTclustered gi|585647666|ref|XM_006814019.1| 10224 g404681 i0 79.496 11.6509090909091 278 51 100 4 1 275 593 867 PREDICTED: Saccoglossus kowalevskii 26S protease regulatory subunit 8-like (LOC100371302), mRNA blastn 3204 193 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
18189579 18189579 PRJNA1237347_P_NODE_180895_length_463_cov_2.251282_g174324_i0 PRJNA1237347 180895 463 2.251282 10.42343566 Ptychodera flava 63121 Hemichordata other_Eukaryota 52.8 0.045   NTclustered gi|2875755042|ref|XM_070707860.1| 63121 g174324 i0 100 1.99568034557235 28 0 18 0 6 33 4135 4162 PREDICTED: Ptychodera flava coiled-coil domain-containing protein 78-like (LOC139139093), transcript variant X1, mRNA blastn 924 52.8 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
19466556 19466556 PRJNA1237347_P_NODE_295356_length_337_cov_1.746212_g288783_i0 PRJNA1237347 295356 337 1.746212 5.88473444 Ptychodera flava 63121 Hemichordata other_Eukaryota 52.8 0.032   NTclustered gi|2875692540|ref|XM_070679529.1| 63121 g288783 i0 100 0.0830860534124629 28 0 8 0 109 136 3160 3133 PREDICTED: Ptychodera flava E3 ubiquitin-protein ligase Arkadia-like (LOC139116833), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
23295076 23295076 PRJNA1237347_P_NODE_411519_length_275_cov_1.143564_g404946_i0 PRJNA1237347 411519 275 1.143564 3.144801 Ptychodera flava 63121 Hemichordata other_Eukaryota 56.5 0.002   NTclustered gi|2875708683|ref|XM_070684930.1| 63121 g404946 i0 100 0.327272727272727 30 0 11 0 199 228 2797 2826 PREDICTED: Ptychodera flava transient receptor potential cation channel subfamily M member 8-like (LOC139120477), transcript variant X1, mRNA blastn 90 56.5 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
24569175 24569175 PRJNA1237347_P_NODE_425080_length_269_cov_1.571429_g418507_i0 PRJNA1237347 425080 269 1.571429 4.22714401 Ptychodera flava 63121 Hemichordata other_Eukaryota 141 5.110000000000001e-29   NTclustered gi|2875653540|ref|XM_070711777.1| 63121 g418507 i0 86.614 46.1672862453532 127 17 47 0 143 269 2227 2101 PREDICTED: Ptychodera flava tubulin alpha-1A chain-like (LOC139141995), mRNA blastn 12419 141 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
25275484 25275484 PRJNA1237347_P_NODE_513440_length_246_cov_0.890173_g506867_i0 PRJNA1237347 513440 246 0.890173 2.18982558 Metazoa 33208 Hemichordata other_Eukaryota 56.5 0.002   NTclustered gi|2875758538|ref|XM_070709640.1| 63121 g506867 i0 100 0.24390243902439 30 0 12 0 216 245 305 334 PREDICTED: Ptychodera flava probable ATP-dependent RNA helicase DDX23 (LOC139140415), mRNA blastn 60 56.5 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;