RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1237347" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1237347 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14366026 14366026 PRJNA1237347_P_NODE_135432_length_559_cov_5.893004_g128900_i0 PRJNA1237347 135432 559 5.893004 32.94189236 Arachnula sp. CL22 862246 SAR_Eukaryotes SAR_Eukaryotes 359 2.9e-94   NTclustered gi|301014696|gb|GQ377694.1| 862246 g128900 i0 88.966 37.7549194991055 290 32 52 0 196 485 2 291 Arachnula sp. CL22 ribosomal protein S23a (rps23a) mRNA, partial cds blastn 21105 359 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Arachnula Arachnula sp. CL22
16350613 16350613 PRJNA1237347_P_NODE_285253_length_344_cov_14.826568_g278680_i0 PRJNA1237347 285253 344 14.826568 51.00339392 Paramarteilia 1871453 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.003   NTclustered gi|2228688988|gb|ON320521.1| 2844372 g278680 i0 100 1.22093023255814 30 0 9 0 1 30 6221 6250 Paramarteilia canceri voucher s-1-16-13 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 420 56.5 1 Eukaryota Sar   Endomyxa Ascetosporea Paramyxida Marteiliidae Paramarteilia Paramarteilia canceri
25273984 25273984 PRJNA1237347_P_NODE_228960_length_396_cov_6.095975_g222388_i0 PRJNA1237347 228960 396 6.095975 24.140061 Paramarteilia 1871453 SAR_Eukaryotes SAR_Eukaryotes 65.8 4.87e-6   NTclustered gi|2228688988|gb|ON320521.1| 2844372 g222388 i0 97.368 10.0151515151515 38 1 10 0 38 75 6212 6249 Paramarteilia canceri voucher s-1-16-13 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 3966 65.8 1 Eukaryota Sar   Endomyxa Ascetosporea Paramyxida Marteiliidae Paramarteilia Paramarteilia canceri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;