RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA1237347" and tax_phylum = "Ctenophora"

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tax_superkingdom 1

tax_phylum 1

  • Ctenophora · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1237347 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18899739 18899739 PRJNA1237347_P_NODE_290655_length_340_cov_108.808989_g284082_i0 PRJNA1237347 290655 340 108.808989 369.9505626 Metazoa 33208 Ctenophora other_Eukaryota 182 3.93e-41   NTclustered gi|15208491|gb|AY026378.1| 34499 g284082 i0 92.248 54.4294117647059 129 9 56 1 3 130 2355 2227 Pleurobrachia bachei 28S large subunit ribosomal RNA gene, partial sequence blastn 18506 183 0.994535519125683 Eukaryota Opisthokonta Metazoa Ctenophora Tentaculata Cydippida Pleurobrachiidae Pleurobrachia Pleurobrachia bachei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;