RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1237347" and tax_phylum = "Candidatus Latescibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Latescibacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1237347 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7998427 7998427 PRJNA1237347_P_NODE_540867_length_243_cov_0.905882_g534294_i0 PRJNA1237347 540867 243 0.905882 2.20129326 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 217 7.34e-52   NTclustered gi|2891482399|emb|OZ220089.1| 2053570 g534294 i0 82.857 111.711934156379 245 38 100 4 1 243 1952596 1952354 MAG: Candidatus Latescibacterota bacterium isolate 4e2a754f-172e-45f6-b93c-83e01e84db49 genome assembly, chromosome: 1 blastn 27146 217 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
15647767 15647767 PRJNA1237347_P_NODE_529333_length_244_cov_0.900585_g522760_i0 PRJNA1237347 529333 244 0.900585 2.1974274 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 134 7.640000000000001e-27   NTclustered gi|2575820357|emb|OY730476.1| 2053570 g522760 i0 84.507 1.16393442622951 142 15 55 3 110 244 59580 59439 MAG: Candidatus Latescibacteria bacterium isolate 667a1def-a863-4bf2-9b98-94036fb31650 genome assembly, chromosome: 1 blastn 284 134 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;