RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1237347" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1237347 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16916692 16916692 PRJNA1237347_P_NODE_254314_length_370_cov_40.666667_g247741_i0 PRJNA1237347 254314 370 40.666667 150.4666679 Blastocladiella emersonii 4808 Fungi Fungi 126 2.0399999999999994e-24   NTclustered gi|2440036|emb|X90411.1| 4808 g247741 i0 80 41.8864864864865 185 25 49 6 188 370 3369 3195 B.emersonii DNA for 28S ribosomal RNA gene blastn 15498 126 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
20175187 20175187 PRJNA1237347_P_NODE_449196_length_259_cov_2.446237_g442623_i0 PRJNA1237347 449196 259 2.446237 6.33575383 Blastocladiella 4807 Fungi Fungi 200 7.959999999999999e-47   NTclustered gi|53829593|gb|AY582849.1| 4808 g442623 i0 82.533 26.5289575289575 229 38 88 2 1 228 77 304 Blastocladiella emersonii strain CBS 56170 beta-tubulin gene, partial cds blastn 6871 200 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
24568244 24568244 PRJNA1237347_P_NODE_376940_length_289_cov_2.254630_g370367_i0 PRJNA1237347 376940 289 2.25463 6.5158807 Blastocladiella emersonii 4808 Fungi Fungi 279 1.13e-70   NTclustered gi|108949307|gb|DQ533709.1| 4808 g370367 i0 84.138 87.7231833910035 290 42 99 4 2 289 1142 1429 Blastocladiella emersonii propionyl coenzyme A carboxylase mRNA, partial cds blastn 25352 279 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;